Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2078 ATGTCTTCTTCCGGCGGCGTCACCTCCGGCAGCCCTCAGCAATACTTCTGCCACCAGTGCAACCGCACAGTCTCCATCGTCCCTTCTTCCTCCGAGCTCCTCTGCCCTAACTGCAACGAAGGCTTCCTCGAAGAACTCGAAACTCCAATCCCTAACCCTAACTTCAGCAATCCTTTCTTCTCTTTCAACTCTGACTTCGCCGGAGGTCCCTCCGCCGGAAACCTCCCGTTCTTATTCTCCGGTGGTGGCGACGATCTATCCACGCTGCTTGGCGGCGGCGTTGGTAACACCGCCGCCTCCGGCGAAGCCTTTAACCCCTTTGTGTTCCTCCAGAACTACCTCCAAACCCTAAGAGCTGGCGGCGCCAACGTCCAGTTCGTGATCGAGAATTCCGGCGACCCTACCACCGGAACGTTCCGGTTTCCCGGAGGGAACATGACTCACGGCGATTACTTCTTCGGCCCGGGGCTCGAGGAGCTGATCCAGCAGCTGGCGGAGAACGATCCGAATCGGTACGGGACGCCGCCAGCATCGAAGTCAGCTGTGGAGGGGCTGCCGGACGTGTCGGTCACAGAGGAGCTGCTGGAATCGGATTCTTCTCAGTGCGCGGTGTGCAAGGACACCTTCAAGCTTGGCGAATCGGCGAAGCAGATCCCCTGTAAGCACATATACCATTCTGATTGCATCTTGCCATGGCTGGAACTGCATAATTCGTGCCCAGTTTGCCGTTACGAGTTGCCTACCGATGATCCGGATTATGAGCGGAGGGCTCAGCGTGGTGGGGTTCCTACGCCTGCCCCAGTGAACCGGTCTGTGGGAGCAGGCGGTTCAGCTGAATCCTCTGATGGAAGTGGTGGCGGTGGTGGTGGTGTTGGCGGTGACAATGATGGCGGGGATAATAGGCAAACGTTGGAGAGGAGGGTGTTTAGGGTTTCTTTGCCGTGGCCGTTTAGGCAATTCGGTGGTTCTCCTGCGGAGACAAGCAATGTTGGGAACAACAACAACAGCAACAGTGGCGGCAACAACAACAGTGGGCAACCGAATTCCGAAAGTAGGGGGAATCGGAATTTTGAGTCAGAGACCAGACAGGAAGATCTTGATTGA 1104 0.5679 MSSSGGVTSGSPQQYFCHQCNRTVSIVPSSSELLCPNCNEGFLEELETPIPNPNFSNPFFSFNSDFAGGPSAGNLPFLFSGGGDDLSTLLGGGVGNTAASGEAFNPFVFLQNYLQTLRAGGANVQFVIENSGDPTTGTFRFPGGNMTHGDYFFGPGLEELIQQLAENDPNRYGTPPASKSAVEGLPDVSVTEELLESDSSQCAVCKDTFKLGESAKQIPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYERRAQRGGVPTPAPVNRSVGAGGSAESSDGSGGGGGGVGGDNDGGDNRQTLERRVFRVSLPWPFRQFGGSPAETSNVGNNNNSNSGGNNNSGQPNSESRGNRNFESETRQEDLD* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2078 367 CDD RING-H2_RNF126_like 201 243 - -
Ahy5g2078 367 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 328 - -
Ahy5g2078 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 249 IPR013083 -
Ahy5g2078 367 SMART ring_2 202 242 IPR001841 -
Ahy5g2078 367 Pfam zinc-ribbon 13 46 IPR039525 GO:0061630
Ahy5g2078 367 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
Ahy5g2078 367 SUPERFAMILY RING/U-box 186 249 - -
Ahy5g2078 367 MobiDBLite consensus disorder prediction 253 367 - -
Ahy5g2078 367 MobiDBLite consensus disorder prediction 322 354 - -
Ahy5g2078 367 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 8 328 - -
Ahy5g2078 367 Pfam Zinc finger, C3HC4 type (RING finger) 201 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2078 Ahy-Chr5 90915213 90919332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2078 160 256 C3H Transcription Factor Family AT5G15820 56.701 2.01e-34 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2078 - K11982 gmx:100784504 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3192 15 153999615 154001852 Ahy5g2078 5 90915213 90919332 hybridization