Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1938 ATGTATAAAGAAAATGGTGTAGTTCATGATGATGATGATATGCATGACATAGAGAGTGAAGGTTTTCTATATTCAAAGGAGGTAGTGGAAAGGCATGAATCAGTGTTTTCCGAAAGGAATGTGACATACTCAGAACCACTTCTATTGAAGAGGAGGAACACCACTTCCCAGGCTGCTATCATTGGTGCCAACCTCTGCCCTATTGAAAGCCTTGATTACGAGATTTTTGAGAATGAGGTTTTTAAGCAAGACTGGAGGTCTAGAAAGAAGGTACAGATATTCCAGTATCTGATACTTAAGTGGGGATTTGCTCTTCTTATTGGATTAGGTACTGGAATTATTGGCCTTTTCAATAGTATTTCAGTTGAGAATATAGCAGGTTTCAAGCTGCTTAGGACTACCAGTCTCATATCTGAACACAGATATCTTGAAGCTTTTGTTGTATATGCCGGTATCAATGTGGTTTTAGCAGCAGCCGCCGGTGCACTTTGTGCTTTTATTTCCCCAGCAGCAGCAGGCTCTGGTATCCCAGAGGTAAAAGCATATCTGAATGGTGTGGATTCACACTCTATACTGGCTCCGAGCACTCTTTTTGTAAAGATTATTGGTTCTATCCTGGGAGTTTCTTCTGGATTTGTGGTAGGCAAAGAAGGACCTATGGTACATACAGGTGCATGCTTAGCTTCTTTGTTGGGGCAGGGTGGATCACGCAAGTATGGCTTGACTTGGTCTTGGCTTAGATATTTCAAAAATGACCGTGATCGGCGAGACCTGATAACTTGTGGTGCGGCTGCTGGTGTTGCTGCTGCCTTTCGTGCTCCAGTAGGTGGTGTCCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTGGCGGAGTGCTCTTCTCTGGAGAACATTTTTCACAACAGCAGTGGTTGCTATTTTTTTCAGAGTTGCAATTCAGTTTTGCTCCACAGGGAAATGCGGGTTATTTGGGGAAGGTGGTCTGATACTTTATGATGTCAATTCATTCACGGGAACATATAGCGCCAGTGACTTAGTAGCAACCATACTATTGGGAATCATTGGAGGCCTTCTTGGAAGTTTGTATAACTACCTTGTTGATAAGGTTGTTCGTACATATAGCATCATCAATGAAAAAGGTGCAGCGTTCAAAATCATGCTTGTTGTTGCAATTTCTCTTTTGACATCATGTTGTTATTATTTCCTACCATGGATTTCAACCTGTGCACCCTGCCCAACTGATAAAACAGAAATCTGTCCCTCGGTCAATGAGTCTGGAGAATACAAAAGGTTTCAGTGCAAACCAGGCTACTACAATGATCTTGCTTCACTCTTTCTAAACACCAATGATGATGCTATTCGTAATCTCTACAGCTCGAGGTTAACCAAGGAGTTTCATATTTCCAGCTTGGGCATCTACTTTGCCACTATCTACTCTCTTGGGATAATCACTTACGGCATTGCTATTCCATCCGGGCTTTTCATTCCAGTTATCCTTGCCGGCGCTGCGTATGGCCGGTTTATAGGGACACTATTCAAACCGATCGCCACTCTTGACACAGGACTCTTTGCTCTCCTTGGATCTGCATCCCTCCTTGGTGGCACCATGAGAATGACAGTCTCAATTTGTGTCATATTGCTTGAACTCACAAATGATCTCTTGTTACTCCCACTTGTGATGGTAGTATTACTAATCTCAAAAACTGTGGGTGATTCCTTCAACAAGGGTGTCTATGACCAAATACTGAAGATCAAAGGGATTCCTTATTTGGAGGCTCATGCAGAACCTTACATGCAGAATTTGGTTGCACGTGACGTCGTCTCTGGCCTACTAATCACCTTTTCAGGTATAGAAAAGGTGGGAAATATACTGCATGCTCTGGAAAATACAGGGCACAATGGTTTTCCTGTCATCAATGAACCACCATTCACGGATATACCAGAGCTCTGTGGACTTGTGCTGAGGTCCCATTTGCTAGTGTTGCTGAAGGCAAAGATTTTTTCGAAGGAAAGGGTGCTTGTGAGCCATGACACCTTCCAAAGAATTTCTGCATTGGATTTCGGAAAGCCAGGACTAGGGAAGGGTGTAAAACTAGAGGATCTAGATATCAAGGAGGAAGAGCAGGATATGTATGTGGACTTGCATCCTATCAGTAATGCATCACCATACACAGTGCTCGAGACAATGTCACTTGCCAAAGCTGCTGTTCTTTTCCGCACACTCGGACTCAGGCACATGTGTCTTGTTCCGAAGAGCCAACTGAGACCACCAGTTGTTGGGATTCTAACTCGCCATGATTTTATGCGGGAGCATGTTTTGGGACTTCATTCTAACATGAATCCTCATTAA 2349 0.4347 MYKENGVVHDDDDMHDIESEGFLYSKEVVERHESVFSERNVTYSEPLLLKRRNTTSQAAIIGANLCPIESLDYEIFENEVFKQDWRSRKKVQIFQYLILKWGFALLIGLGTGIIGLFNSISVENIAGFKLLRTTSLISEHRYLEAFVVYAGINVVLAAAAGALCAFISPAAAGSGIPEVKAYLNGVDSHSILAPSTLFVKIIGSILGVSSGFVVGKEGPMVHTGACLASLLGQGGSRKYGLTWSWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIFFRVAIQFCSTGKCGLFGEGGLILYDVNSFTGTYSASDLVATILLGIIGGLLGSLYNYLVDKVVRTYSIINEKGAAFKIMLVVAISLLTSCCYYFLPWISTCAPCPTDKTEICPSVNESGEYKRFQCKPGYYNDLASLFLNTNDDAIRNLYSSRLTKEFHISSLGIYFATIYSLGIITYGIAIPSGLFIPVILAGAAYGRFIGTLFKPIATLDTGLFALLGSASLLGGTMRMTVSICVILLELTNDLLLLPLVMVVLLISKTVGDSFNKGVYDQILKIKGIPYLEAHAEPYMQNLVARDVVSGLLITFSGIEKVGNILHALENTGHNGFPVINEPPFTDIPELCGLVLRSHLLVLLKAKIFSKERVLVSHDTFQRISALDFGKPGLGKGVKLEDLDIKEEEQDMYVDLHPISNASPYTVLETMSLAKAAVLFRTLGLRHMCLVPKSQLRPPVVGILTRHDFMREHVLGLHSNMNPH* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1938 782 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 31 781 - -
Ahy5g1938 782 CDD CBS_pair_voltage-gated_CLC_euk_bac 603 770 - -
Ahy5g1938 782 Gene3D - 590 772 IPR046342 -
Ahy5g1938 782 Gene3D Clc chloride channel 92 589 - -
Ahy5g1938 782 SUPERFAMILY CBS-domain pair 594 770 IPR046342 -
Ahy5g1938 782 PRINTS Plant CLC chloride channel signature 285 293 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy5g1938 782 PRINTS Plant CLC chloride channel signature 441 457 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy5g1938 782 PRINTS Plant CLC chloride channel signature 74 82 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy5g1938 782 PRINTS Plant CLC chloride channel signature 299 309 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy5g1938 782 PRINTS Plant CLC chloride channel signature 317 324 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy5g1938 782 Pfam Voltage gated chloride channel 157 570 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy5g1938 782 PRINTS Chloride channel signature 521 537 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy5g1938 782 PRINTS Chloride channel signature 200 219 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy5g1938 782 PRINTS Chloride channel signature 577 591 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy5g1938 782 PRINTS Chloride channel signature 264 283 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy5g1938 782 PRINTS Chloride channel signature 169 186 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy5g1938 782 PRINTS Chloride channel signature 539 558 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy5g1938 782 PRINTS Chloride channel signature 489 509 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy5g1938 782 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 31 781 - -
Ahy5g1938 782 SUPERFAMILY Clc chloride channel 78 593 IPR014743 -
Ahy5g1938 782 ProSiteProfiles CBS domain profile. 717 778 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1938 Ahy-Chr5 88129051 88134878 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1938 11 781 Ion Channels AT5G49890 69.509 0.0 1079
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1938 K05016 - gmx:100809070 1139.79