Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1937 ATGGAGAACAAACAAGATGGTGTAAGCAATGGTGATGGGGATGTACTACATGACATTGAAAATGAAGGTGTATTGTTGGATGGGAAGGGCGAAATTCGGAGGAATTGGTCGGAGTTTTCGGAAAGGAACATGTCATATGCAGAGCCACTGCTTGTTAAAAGGACTAACACAACCTCCCAGATTGCTATAATTGGTGCCAACCTCAGCCCTATTGAAAGCCTTGATTATGAGATTTTTGAGAATGAAATTTTTAATCAGGATTGGAGGTCCAGGAAGAAAATTCAGATAATCCAGTATGTGATACTTAAGTGGGGATTTGCTCTTATTATTGGATTAGGCACTGGACTAGTTGGCCTCTTCAATAATATTTCAGTTGAGAACATTGCTGGTTTCAAGTTGCTTATGACAACCACTCTCATGACTCAACACAGATATGTTGAGGCTTTTGTAGCATATGCCGGTATCAATGTAGTTTTAGCAGCAGCAGCTGCTGCACTTTGTGCTTTCATTGCTCCAGCAGCAGCAGGCTCTGGTATTCCGGAGGTGAAAGCATATTTGAACGGCGTGGATGCGCATTCTATACTTGCTCCGAGCACTCTTTTTGTAAAGATTTTTGGTTCCGTCCTTGGAGTTTCTGCTGGATTTGTGGTAGGCAAAGAAGGACCTATGGTACATACAGGTGCATGCATAGCTAATTTATTGGGGCAAGGAGGATCTCGCAAGTACGGTTTAACTTGGAATTGGCTTAGATATTTCAAGAATGACAGGGACCGGCGAGACATGATTACTTGTGGCGCGGCTGCTGGTGTTGCTGCTGCCTTTCGCGCACCAGTAGGTGGGGTCCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTGGAGGAGTGCTCTTTTGTGGAGGACATTTTTCACCACAGCAGTAGTTGCTATTGTTTTAAGAGCTGCAATTCAGTTTTGCGCCACCGGGAAATGCGGCTTATTCGGAGAAGGTGGTCTGATAATGTATGATGTTGGTTCTTCCAAGGTAACATACAGCGCCGGCGACGTACTAGCAGCAATACTATTGGGAGTCATTGGAGGAGTTCTTGGAAGTGTATATAACTACCTTGTGGATAAGGTTGTTCGGACATATAGCATCATCAATGAAAAAGGTGCAGTTTTCAAAATCATACTTGTTGTCACAATTGCTCTCTTGACATCATGTTGCTTTTATTTCCTACCATGGATTGCAACCTGCAAACCCTGCCCTACTAATGAATCGGTGATCTGTCCCTCGGTAGACGAGTCCGGAGAATACAAAAGCTTTCAGTGCAAACCAGGCTACTACAATGATCTTGCTTCACTCTTCCTAAACACCAATGATGATGCTATTAGAAATCTCTTCAGCTCTAGGATAACCAAGGAGTTTCATATTTCAAGCTTGTTCATCTACTTTGGCACTATCTTCTTTCTTGGGATAGCCACTTATGGTATTGCTGTTCCATCAGGCCTCTTCATTCCTGTTATCCTAGCCGGGGCTGCATACGGCCGGCTTGTTGGGAGACTATTCGAACCGATCGTTAAGCTGGACACAGGACTATTTGCACTGCTTGGAGCTGCATCCTTCCTTGGTGGCACAATGAGAATGACTGTCTCCATTTGTGTCATATTGCTTGAGCTCACGAATGACCTCTTATTACTTCCTCTTGTGATGCTGGTTTTATTGATATCAAAATCTGTGGCCGATGGCTTCAACAAGGGTGTCTATGACCAAATTCTGAAGATCAAAGGACTTCCTTATATGGAGTCTCATGCAGAACCTTATATGAGGACTTTGGCTGCGCGAGACGTTGTCTCGGGTCCATTAGTAACCTTCTCTGGCATAGAAAAGGTTGGGAATATACTTCATGCTTTGGAAACTACAGGACACAATGGTTTTCCTGTGATTGATGAACCACCTTTCTCAGATGCAGCAGAGTTGTGTGGACTTGTTCTGAGGTCTCATTTGCTAGTGTTGCTTAAGGGGAAGAACTTCACAAAGGATAGACTGTTCATGGGCCGTAGCATCTCGAAACGAATTTCTGCATTGGATTTTGCAAAGGCTGGATCAGGGAAGGGAATGAAACTAGAGGATCTTGATATCAATGAGGAAGAGAAGAACATGTATGTTGATCTTCATCCCATAACTAATGCATCACCGTACACAGTGCTCGAGACAATGTCACTTGCCAAAGCTGCCATTCTCTTCCGCCAACTCGGACTTAGGCACATGTGTGTTGTCCCAAAGAGCCAAGGGAGACCACCAGTTGTTGGGATTCTAACGCGCCACGACTTCATGCCGGAGCATATTTTGGGACTATACCCTGGAATCAATCCTCACAAAGAGGACTGA 2367 0.444 MENKQDGVSNGDGDVLHDIENEGVLLDGKGEIRRNWSEFSERNMSYAEPLLVKRTNTTSQIAIIGANLSPIESLDYEIFENEIFNQDWRSRKKIQIIQYVILKWGFALIIGLGTGLVGLFNNISVENIAGFKLLMTTTLMTQHRYVEAFVAYAGINVVLAAAAAALCAFIAPAAAGSGIPEVKAYLNGVDAHSILAPSTLFVKIFGSVLGVSAGFVVGKEGPMVHTGACIANLLGQGGSRKYGLTWNWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRAAIQFCATGKCGLFGEGGLIMYDVGSSKVTYSAGDVLAAILLGVIGGVLGSVYNYLVDKVVRTYSIINEKGAVFKIILVVTIALLTSCCFYFLPWIATCKPCPTNESVICPSVDESGEYKSFQCKPGYYNDLASLFLNTNDDAIRNLFSSRITKEFHISSLFIYFGTIFFLGIATYGIAVPSGLFIPVILAGAAYGRLVGRLFEPIVKLDTGLFALLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMLVLLISKSVADGFNKGVYDQILKIKGLPYMESHAEPYMRTLAARDVVSGPLVTFSGIEKVGNILHALETTGHNGFPVIDEPPFSDAAELCGLVLRSHLLVLLKGKNFTKDRLFMGRSISKRISALDFAKAGSGKGMKLEDLDINEEEKNMYVDLHPITNASPYTVLETMSLAKAAILFRQLGLRHMCVVPKSQGRPPVVGILTRHDFMPEHILGLYPGINPHKED* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1937 788 Gene3D Clc chloride channel 94 593 - -
Ahy5g1937 788 SMART cbs_1 613 666 IPR000644 -
Ahy5g1937 788 SMART cbs_1 724 775 IPR000644 -
Ahy5g1937 788 Gene3D - 594 776 IPR046342 -
Ahy5g1937 788 SUPERFAMILY Clc chloride channel 81 595 IPR014743 -
Ahy5g1937 788 CDD CBS_pair_voltage-gated_CLC_euk_bac 606 773 - -
Ahy5g1937 788 SUPERFAMILY CBS-domain pair 596 771 IPR046342 -
Ahy5g1937 788 PRINTS Chloride channel signature 524 540 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy5g1937 788 PRINTS Chloride channel signature 542 561 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy5g1937 788 PRINTS Chloride channel signature 203 222 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy5g1937 788 PRINTS Chloride channel signature 492 512 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy5g1937 788 PRINTS Chloride channel signature 172 189 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy5g1937 788 PRINTS Chloride channel signature 580 594 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy5g1937 788 PRINTS Chloride channel signature 267 286 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy5g1937 788 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 37 786 - -
Ahy5g1937 788 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 37 786 - -
Ahy5g1937 788 Pfam CBS domain 724 770 IPR000644 -
Ahy5g1937 788 ProSiteProfiles CBS domain profile. 720 787 IPR000644 -
Ahy5g1937 788 Pfam Voltage gated chloride channel 160 574 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ahy5g1937 788 CDD ClC_6_like 72 593 - -
Ahy5g1937 788 PRINTS Plant CLC chloride channel signature 77 85 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy5g1937 788 PRINTS Plant CLC chloride channel signature 320 327 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy5g1937 788 PRINTS Plant CLC chloride channel signature 302 312 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy5g1937 788 PRINTS Plant CLC chloride channel signature 444 460 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ahy5g1937 788 PRINTS Plant CLC chloride channel signature 288 296 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1937 Ahy-Chr5 88121276 88127124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1937 17 786 Ion Channels AT5G49890 72.798 0.0 1119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1937 K05016 - jre:108982434 1209.51