Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1900 ATGGCTTCAATTGGGGTGTCTGAGATGCTTGGAAACCCCATCAAGTTGAGTGGTGCAGCAAGGTCAGCACCATCAGCTTCTAGCCCTGCCACCTTCAAGACTGTGGCTCTCTTTGGTAAGAAGAAGGCAGCACCACCTCCTCCTTCAAAGAAAGCTGCTGCTGCTGTCACTCCTGCCAATGATGAACTCGCCAAGTGGTATGGTCCTGACAGAAGGATCTTCTTGCCAGAGGGTCTCTTGGACCGATCCGAGATCCCACCATACTTGACTGGAGAAGTGCCCGGAGACTATGGTTATGATCCTTTTGGTCTCAGCAAGAAGCCAGAGGACTTTGCCAAATATCAGGCATACGAGTTGATTCACGCAAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTCAACAAATTCGGAGCTAACTGCGGTCCTGAGGCTGTTTGGTTCAAGACCGGAGCTCTTCTTCTCGATGGTGGAACGCTTAACTACTTTGGGAAGCCGATCCCCATCAACCTCATTGTTGCTGTCGTCGCTGAGATTGTACTTTTGGGTGGTGCAGAGTACTACAGAATTATCAATGGCCTGGATTTGGAAGATAAGCTTCATCCAGGTGGTCCATTCGACCCGTTGGGACTTGCAAAGGATCCGGACCAAGCTGCATTGTTGAAGGTGAAGGAGATCAAGAATGGAAGGCTTGCCATGTTTGCCATGCTTGGTTTCTACTTCCAAGCTTATGTCACCGGAGAAGGCCCCGTCGAGAACCTTGCAAAGCATCTCAGTGACCCCTTTGGCAACAACTTGCTCACTGTCATTGCTGGTTCTGCTGAGAGAGTTCCAACTCTTTGA 855 0.5018 MASIGVSEMLGNPIKLSGAARSAPSASSPATFKTVALFGKKKAAPPPPSKKAAAAVTPANDELAKWYGPDRRIFLPEGLLDRSEIPPYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVVAEIVLLGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERVPTL* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1900 284 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 284 IPR001344 GO:0009765|GO:0016020
Ahy5g1900 284 SUPERFAMILY Chlorophyll a-b binding protein 65 275 - -
Ahy5g1900 284 Pfam Chlorophyll A-B binding protein 86 247 IPR022796 -
Ahy5g1900 284 Gene3D Chlorophyll a/b binding protein domain 73 284 - -
Ahy5g1900 284 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 2 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1900 Ahy-Chr5 87258377 87260737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1900 1 284 Chloroplast and Mitochondria Gene Families AT4G10340 80.351 3.23e-152 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1900 K08916 - gmx:100806585 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3387 15 156346496 156348851 Ahy5g1900 5 87258377 87260737 hybridization