Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1889 ATGGAAAAAGAAGATATTTTTGGTTCCGGGCATGCGGTCAAGGCTGATGAGGCTCCAGGGGGCTTCCACGTGGCACCAAGAAGTGAAAATATACAGTTTTCTGCACCCACGGCGGAGCCACCGCAGCAGCCGGTGGTTCCGACCACGGCTATGGTGGCAGTAACACCGGCGACAGGGACGGATGGGAAGAAGAAGAGGGGGAGGCCTAGAAAGTATGGACCGGACGGCAAGTTGACGCCGGAGGCAGCAGCGAAGGCGTTGTCTCCGATGCCGATATCGGCGTCGATTCCGTTGACCGGAGAGTTCTCAGGGTGGAAAAAGGGTAGAGGAAAGGCTGTTGAATCAATGAAGAAGTCATATAAATTTTTTGAGTTTGAAAATGCTGGAGGACCAGGTAATGGAATTGCATACTCAGTTGGTGCCAACTTCACACCTCACATTCTTACAGTAAATGCTGGAGAGGATGTTACTATGAAGATTATGTCCTTTTCTCAGGACGGATCCCGTGCCATATGCATTCTCTCTGCCAATGGCACGATTTCAAATGTCACGCTTCGTCAACCAACTTCTTCCGGCGGCACTTTAACATATGAGGGACGGTTCGAGATTCTTTCCTTGTCTGGCTCATATATGCCAACCGAGAACGGATTCACAAGGAGCAGATCTGGTGGGATGAGTGTTTCTTTGGCAGGTCCAGATGGTCGAGTAATGGGAGGAGGACTTGCCGGTTTGCTGGTAGCTGCAGGTCCTGTGCAGGTTGTTGTTGGTAGTTTCATTCCAGGTCACCAGTTAGAACATAAACAAAAGAAGCAAAGGGTGGAACATCATATATCATCAACTATATCTGCTCCACTTAATGTTCCTACTATTTCTGCTGAAGAAATGAAGATAAGTCTTGGTGGAGTGAAGCCTTTCATGACACCCCCTTCGGTTCCTTTTCAAGTCGAAAACATTCCTCCTCCTCCTCCTGCGTTTGTCAACGGCCAATGTTCTCTGAACTCATCTGGTGACGACGATGATGAAGAAGATGCCTCTTTGCATGAGAAAGAATCTAATCCTAGTCTTTCAGATCCTGCTGGAGTTGCATGCTAA 1092 0.4844 MEKEDIFGSGHAVKADEAPGGFHVAPRSENIQFSAPTAEPPQQPVVPTTAMVAVTPATGTDGKKKRGRPRKYGPDGKLTPEAAAKALSPMPISASIPLTGEFSGWKKGRGKAVESMKKSYKFFEFENAGGPGNGIAYSVGANFTPHILTVNAGEDVTMKIMSFSQDGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPTENGFTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFIPGHQLEHKQKKQRVEHHISSTISAPLNVPTISAEEMKISLGGVKPFMTPPSVPFQVENIPPPPPAFVNGQCSLNSSGDDDDEEDASLHEKESNPSLSDPAGVAC* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1889 363 ProSiteProfiles PPC domain profile profile. 140 283 IPR005175 -
Ahy5g1889 363 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 261 - -
Ahy5g1889 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 7 322 IPR039605 GO:0003680
Ahy5g1889 363 Pfam Plants and Prokaryotes Conserved (PCC) domain 145 258 IPR005175 -
Ahy5g1889 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 7 322 - -
Ahy5g1889 363 MobiDBLite consensus disorder prediction 313 363 - -
Ahy5g1889 363 MobiDBLite consensus disorder prediction 1 77 - -
Ahy5g1889 363 CDD DUF296 144 258 IPR005175 -
Ahy5g1889 363 Gene3D - 145 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1889 Ahy-Chr5 87085487 87089801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1889 53 271 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 63.274 7.44e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1889 - - adu:107489679 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3396 15 156459542 156463949 Ahy5g1889 5 87085487 87089801 hybridization
Ahy5g1889 5 87085487 87089801 Ahy19g1938 19 112677926 112684475 PCT
Ahy5g1889 5 87085487 87089801 Ahy9g1575 9 85348917 85355287 PCT
Ahy19g1938 19 112677926 112684475 Ahy5g1889 5 87085487 87089801 PCT
Ahy9g1575 9 85348917 85355287 Ahy5g1889 5 87085487 87089801 PCT