Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1876 ATGCCTTCCCTTGCTCTCTCAAACGGCGCCGTTCCCTCCCCTAAGGACACCAAAAAACACAAATCCAAAAAGGAAAAGAAAGAAAACAACGTCGACGACGCTCAGGCTCAGCAGCTACACGACGCCGTTTCTGAAACCAAGAAGAAAAGCTCCAAGAAGAGGAAGAAGCTCTCCTCTGATGAGGATGAGGACGATCAGAAGAGTGAGACTAGCTCTGAGCTCGTTGAGCCTCAGAATGATGAAGGCTTGAAATCCAAGGAGAAGAAGAAGAGCAAGAAGGAGAAGAATAAGAAGGCCAAGTTGGACATGGATGAGGAAGAGGAGGAGGAAGAAGAGGTTCTCAAAAAGGAGGAGGATCCTAACGCCATTACCAACTTCAGAATCTCCGAGCCTCTTAGGGCAAAGCTCAAGGAGAAGGGAATTGAGTCTCTCTTCCCGATTCAGGCCATGACCTTCGATATCATCCTCGATGGCTCTGATTTGGTTGGTCGCGCTCGCACCGGTCAGGGTAAAACTCTGGCTTTTGTGTTGCCCATACTAGAGTCTTTAATCAATGGTCCTGCCAAAGCGTTCAGAAAGACCGGTTTTGGGAGGGCTCCAAGTGTCCTTGTTCTTTTACCCACCAGGGAATTGGCAAGTCAGGTGTATGCTGATTTTGAAGTTTATGGTGGAGCAATGGGATTGAGTTCTTGCTGTTTATATGGTGGGGCTCCATACCAGACTCAAGAGAGTAAGCTTAGGAGAGGAGTTGATATTGTTGTTGGCACTCCAGGTCGTGTGAAGGATCATATAGAGAGGGAAAATATTGACCTGAGCCAGCTAAAGTTCCGTGTCCTTGATGAGGCTGATGAGATGCTCCGAATGGGTTTTGTTGAAGATGTGGAACTAATTCTAGGCAAGGTACAAGATGTTAGCAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTTCTGGAAAATTTCTGAAACCAGATAAAAAAACTGCAGATCTGGTGGGAAATGCAAAAATGAAGGCTAGCACCAATGTTAGACATATTGTTCTTCCATGTAACGTTTCTGCCAGGGCCCAGCTTATCCCAGACATTATACGCTGTTATAGCAGTGGAGGCCGAACAATTATATTTACTGAGAAAAAGGAGTCTGCTTCTGAGCTTGCCGGCTTGTTGCCCGGAGCAAGAGCTCTACATGGTGATATACAGCAATCACAACGTGAGGTTACACTGGCTGGTTTTAGGTCTGGGAAATTCATGACTTTGGTTGCCACAAATGTGGCAGCGAGGGGTTTAGATATTAATGATGTTCAGTTAATTATCCAGTGTGAGCCCCCACGTGATGTAGAAGCCTACATTCATCGATCTGGGCGCACAGGAAGAGCAGGAAATACGGGAGTTGCTGTAATGCTTTATGATCCCAGGCGATCAAATGTATCTAAAATAGAAAGGGAATCGGGTGTGAAATTTGAGCACATATCTGCCCCCCAGCCTGATGATATTGCCAAAGCTGTTGGTGGAGAAGCTGCTGAAATGATTACCCAAGTGTCTGATAGTGTGATTCCTGCGTTCAAGTCTGCGGCCGAGGAGCTTTTGAACAACTCTGGTTTATCAGCTGCTGATCTACTTGCAAAAGCACTTGCCAAGGCTGTGGGCTTTACCGAGATAAAGAAAAGATCACTTTTGACTTCCATGGAGAATTACGTTACACTGCTTCTTGAGATTGGAAAACCTATGTTCACGCCGTCCTTTGTTTTCGGAATCCTAAGGAGATTCTTGCCCGAGGAGCAGGTTGAGGCTGTGCAGGGTTTGACTCTCACTGCAGATGGAAATGGTGCAGTGTTTGATGTACCAGCCAAGGATTTAGACATTTATCTTACTGGTCAGCAGAAAGCTGGTAATGTAAGCCTAGAGGTGTTGAAAACATTACCACGTTTGCAAGAAAGAGAGCAATCAAGGGGGGGCAGATTTGGTGGCGGTCGAGGGTTTAATGATAGAAATGGTGGGAACAGGTTTGGAAGAGGTGGTGGCAGGAATGGTAGATTCGGCCAGAACGATAGGTTTTCGAATGGGAGAGGTAATTTCAACAAAGGTGGAAAGAGATGGTAA 2118 0.4599 MPSLALSNGAVPSPKDTKKHKSKKEKKENNVDDAQAQQLHDAVSETKKKSSKKRKKLSSDEDEDDQKSETSSELVEPQNDEGLKSKEKKKSKKEKNKKAKLDMDEEEEEEEEVLKKEEDPNAITNFRISEPLRAKLKEKGIESLFPIQAMTFDIILDGSDLVGRARTGQGKTLAFVLPILESLINGPAKAFRKTGFGRAPSVLVLLPTRELASQVYADFEVYGGAMGLSSCCLYGGAPYQTQESKLRRGVDIVVGTPGRVKDHIERENIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVQDVSKVQTLLFSATLPDWVKHISGKFLKPDKKTADLVGNAKMKASTNVRHIVLPCNVSARAQLIPDIIRCYSSGGRTIIFTEKKESASELAGLLPGARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNVSKIERESGVKFEHISAPQPDDIAKAVGGEAAEMITQVSDSVIPAFKSAAEELLNNSGLSAADLLAKALAKAVGFTEIKKRSLLTSMENYVTLLLEIGKPMFTPSFVFGILRRFLPEEQVEAVQGLTLTADGNGAVFDVPAKDLDIYLTGQQKAGNVSLEVLKTLPRLQEREQSRGGRFGGGRGFNDRNGGNRFGRGGGRNGRFGQNDRFSNGRGNFNKGGKRW* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1876 705 Coils Coil 17 37 - -
Ahy5g1876 705 CDD SF2_C_DEAD 349 475 - -
Ahy5g1876 705 CDD GUCT_RH7_like 562 647 - -
Ahy5g1876 705 SUPERFAMILY RNA-binding domain, RBD 559 642 IPR035979 GO:0003676
Ahy5g1876 705 MobiDBLite consensus disorder prediction 1 116 - -
Ahy5g1876 705 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 34 683 - -
Ahy5g1876 705 SMART ultradead3 140 352 IPR014001 -
Ahy5g1876 705 MobiDBLite consensus disorder prediction 652 705 - -
Ahy5g1876 705 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 278 286 IPR000629 -
Ahy5g1876 705 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 363 505 IPR001650 -
Ahy5g1876 705 MobiDBLite consensus disorder prediction 14 34 - -
Ahy5g1876 705 Pfam DEAD/DEAH box helicase 145 322 IPR011545 GO:0003676|GO:0005524
Ahy5g1876 705 Gene3D - 573 644 - -
Ahy5g1876 705 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 334 IPR014001 -
Ahy5g1876 705 CDD DEADc 132 329 - -
Ahy5g1876 705 Gene3D - 65 334 IPR027417 -
Ahy5g1876 705 Gene3D - 350 572 IPR027417 -
Ahy5g1876 705 SMART helicmild6 389 466 IPR001650 -
Ahy5g1876 705 Pfam GUCT (NUC152) domain 555 650 IPR012562 GO:0003723|GO:0004386|GO:0005524
Ahy5g1876 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 478 IPR027417 -
Ahy5g1876 705 Coils Coil 89 116 - -
Ahy5g1876 705 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 34 683 - -
Ahy5g1876 705 Pfam Helicase conserved C-terminal domain 367 466 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1876 Ahy-Chr5 86924555 86929156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1876 106 472 Eukaryotic Initiation Factors Gene Family AT1G72730 30.831 5.07e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1876 K16911 - gmx:100820207 932.554