Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1847 ATGCCTCCTCCATTTGATTCTATCTCTAAGATCCACCCTCCAAGGGAGGCATGGAGACTTAAAGTTAGGGTACTAAGAACTTGGATTGTTCCTTCTTTTGGAAATTATGATGTTGCAAATTCAATGGAAATTGTTCTTGTTGATGGAGATTCTAACAAAATACAAGCAACTGTTAAGAAGCAGCTCATAAATAGGTTTAAAGAGAGTATTATCGAGGGTCAAACATACCGAATGTCATATTTTAGTGTTGTTCCAAACCAAGGCAATTATAGGGCAGCAGAACATGAGTTTAAGTTGGTTTTTCTTAACCGTACAACTGTTATCCCTGTCCCTGACGATGATATCCCAAAGACATGTTTCAGTTTCTGTCCCTTTGATGAGCTCTTGAATATGACTGAAGATTATGTTTACTTAGTTGATGTTATTGGTTTGCTAACTTCTGTTGGTGAAGAGAAAGAGTATGTGAAAGATGCGAAAGTGATGAAGATGATCGTTCTTGAGTTATCTTCAAAAGAGTTGACAATACGTTGTGCTTTGTTTGGGGAGTATGTGGATGAAGTGCATCGTTTCTTAGGTTCTGGCTATATGGAGCAGCCAGTTGTTGTGATCCAACTTGCCAAAGTTAAATTTTTTAGGGGACAAGTTGGTCTCCAAAATGTTATGCATGCTACTCGGCTGTTCTTTAATCCAGATTTGTCTGAAGTAGTTAATTTCAAAAACAGTATGATTGACCAAGGTATCAATGGAACACAGCCATTATTTATTGCTAATGAGGGCAAGGTTGTTTCATTGGAAGATGATTTTACGTGGCTTACTAGAAGATGCACTATTGACGAACTTCATGATAACAACGAGGAGGGGTCTTTTGTGGTTTTTGGTTTTGTGAGATCTATTGTGGACGAGGGACCTTGGTGGTATTCAGCTTGTGTTTGTGGGAAGTCAATTCAGCCTCAAGGTGGTGCATATTATTGTGATTTTTGTCAGCACTATGTTACCAATGTGACTCCCGGATATAGGATCAAAATAGCTGTTGTGGATGATAATGGACATGGTGTATTTGTGTTAATTCGATCGTGA 1077 0.3844 MPPPFDSISKIHPPREAWRLKVRVLRTWIVPSFGNYDVANSMEIVLVDGDSNKIQATVKKQLINRFKESIIEGQTYRMSYFSVVPNQGNYRAAEHEFKLVFLNRTTVIPVPDDDIPKTCFSFCPFDELLNMTEDYVYLVDVIGLLTSVGEEKEYVKDAKVMKMIVLELSSKELTIRCALFGEYVDEVHRFLGSGYMEQPVVVIQLAKVKFFRGQVGLQNVMHATRLFFNPDLSEVVNFKNSMIDQGINGTQPLFIANEGKVVSLEDDFTWLTRRCTIDELHDNNEEGSFVVFGFVRSIVDEGPWWYSACVCGKSIQPQGGAYYCDFCQHYVTNVTPGYRIKIAVVDDNGHGVFVLIRS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1847 358 SUPERFAMILY Nucleic acid-binding proteins 3 114 IPR012340 -
Ahy5g1847 358 CDD RPA1_DBD_B_like 140 243 - -
Ahy5g1847 358 SUPERFAMILY Nucleic acid-binding proteins 272 353 IPR012340 -
Ahy5g1847 358 CDD RPA1_DBD_A_like 19 107 - -
Ahy5g1847 358 Pfam Domain of unknown function DUF223 43 132 IPR003871 -
Ahy5g1847 358 Gene3D - 114 250 IPR012340 -
Ahy5g1847 358 Gene3D - 265 358 IPR012340 -
Ahy5g1847 358 Gene3D - 4 113 IPR012340 -
Ahy5g1847 358 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 355 - -
Ahy5g1847 358 PANTHER REPLICATION FACTOR A 1, RFA1 22 355 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy5g1847 358 SUPERFAMILY Nucleic acid-binding proteins 120 242 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1847 Ahy-Chr5 83551718 83557306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1847 8 349 Core DNA Replication Machinery Family AT2G06510 23.333 3.33e-18 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1847 - - aip:107647213 541.962