Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1815 ATGGGTAGAGGGAAGGTGGAGCTGAAGAGGATTGAGAACAAGATAAACAGGCAAGTGACGTTTGCAAAGAGAAGAAACGGTTTGCTGAAGAAGGCTTATGAGCTTTCTATCCTCTGTGATGCCGAAGTTGCTCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGCACTTCTAGCATGGCGAAGACACTTGAACGGTACCAGAAATGCAGTTATGGTGCCTTGGAAGTAAATCACCAACCTGCTATGGAGACACAGAGGCGCTATCAAGAGTATCTCAAGCTGAAATCAAAAGTTGAGGCACTACAGAAGACTCAAAGAAATCTCCTTGGGGAAGAATTGGATAACTTAGATGTTAACGAGCTTGAACGGCTTGAGCGTCAGCTTGACTCCTCGTTGAAGCAAATTAGGTCTAACAAGACACAACTTTTGCTCGACCAACTCTCGGATTTGCAAAGAAAGGAAGAGATGCTGTTGGAAACAAATAATGTCCTCCGGAGCAAGGTATCAAGACAAAACACTACTGTTGTTCATTTGGAGGAAATTAATATGGCGATTCAACCAACATGGGAAGCTAGGGAGCAAAATGCTCCCTACAGCCGACACCCTCAGCAATCAGAGGGATACTATGAGACAACACAATGCAATAGCACATTACAAATCGGATACGGTTCTTCGGTGACAAATGATGCAGTAGGTGGTGCAGGAACATCAACCCAAAATGCTAGTGAATTCATGCATGGATGGATGGAAGTATAA 768 0.4414 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCSTSSMAKTLERYQKCSYGALEVNHQPAMETQRRYQEYLKLKSKVEALQKTQRNLLGEELDNLDVNELERLERQLDSSLKQIRSNKTQLLLDQLSDLQRKEEMLLETNNVLRSKVSRQNTTVVHLEEINMAIQPTWEAREQNAPYSRHPQQSEGYYETTQCNSTLQIGYGSSVTNDAVGGAGTSTQNASEFMHGWMEV* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1815 255 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 237 - -
Ahy5g1815 255 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy5g1815 255 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Ahy5g1815 255 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy5g1815 255 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy5g1815 255 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Ahy5g1815 255 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy5g1815 255 Gene3D - 13 111 IPR036879 GO:0003677|GO:0046983
Ahy5g1815 255 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy5g1815 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy5g1815 255 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy5g1815 255 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy5g1815 255 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy5g1815 255 Coils Coil 122 145 - -
Ahy5g1815 255 PANTHER MADS BOX PROTEIN 1 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1815 Ahy-Chr5 76515371 76535112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1815 1 225 MADS-box Gene Family AT5G15800 66.222 8.27e-99 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy5g1815 K-box 4.30E-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1815 K09264 - gmx:100811049 387.882