Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1810 ATGGAACCTTGGAGTTATGTTCCTGATGAGAAAGGATATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTTGTGAGAAGTAGAAAGGCAATGACTGAATGGGACAACAAAGCCTCTTGTAACTTCGAGAGAGGCGGTTTCAATTCGGAAAGAGAGGTAGTTAGGAGCATGGAATTCGTAGACTTGGGGTTCCCGGATTTGTTCCGAAAGCCCTTCGAGCTAGATAGTAATTTGAGTAGAAGAGGGAATACCTCTGCTCAAGTTATTGACTTGGATTCTTCTCTTGGGGAAGAAGAATCCGAGTCAAAGCATTTGAGTTCTTTAGGTGAATTGAAGGCTCAAGATACGTCATTGATCGATCTGAAGCTAGGGAGAATAGCAGATTGTCAAGCTGCAAGCAATGATAAAGTTGGAAATGAAGGGTTCACTTTAATACCAATGCAACAACCAAGTCCGACCACACTGGCAAAGAGAGCTCGCACTTCATGCTCGCCGAATCAGACTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGTTCCTCAAAAGATTACCACAAAAGGCACAAGGTTTGTGATGTTCATTCCAAGACAGCTAAAGTTATTGTTAACGGTATTGAACAGAGATTTTGTCAGCAATGCAGCAGGTTCCAATTGTTAGCTGAGTTTGATGATGGTAAGCGCAGCTGTCGCAGGCGTCTAGCAGGACACAATGAACGGCGAAGGAAACCTCAGTTTGATTATATGACTAGTAAACAGCATAAGATACTTCATTCGCATCAAGGTGCAAGATATATGGAGTCTTCCTTACAAAAGAGGCCACAATTTTCATTTCCAGACATATTTCGAAGTGGCAAGTATGATAAAATCTCTCAGAATGGCAATGTCAAATTAGAAGAGGAGTTTATTTTCAGCCCTCAATTCGCAGCACCGGTCGCGCATGGTCAGGAGTTATCTAGCCGTGCTCTCTCTCTTCTGTCAGCTCAGTCACAGATTCCATCGCGCCCCTCAGAAGAAAATCCTTTAGCCAGCTCCTTTAGTTTTCACAGCATCTCTGAAATGCCTTTGGATATAAGCAATGAGGGTAAATACGTTGTGGACGAGTCCTTTCCGTGCGAGATGAACCATAAAGAATTTATCAAGAGTGAATCGGCAATGCTTTCTGATGCCGGCCACCCTGATCATCGAGCCAGTAGTGATGACATTTGTTCGCCCTTGGAACATGGATCCACTGTGGACTTATTCCAGTTATCATCCAATCTTGAAAGGGTAGAGCAGAAGAGAAATTCTGTTTTGGTAAAGTGGGAAAATGAGAACTCTTGTTTCCCAGCATTGTAA 1347 0.4254 MEPWSYVPDEKGYLFSDEMDFSLDAFVRSRKAMTEWDNKASCNFERGGFNSEREVVRSMEFVDLGFPDLFRKPFELDSNLSRRGNTSAQVIDLDSSLGEEESESKHLSSLGELKAQDTSLIDLKLGRIADCQAASNDKVGNEGFTLIPMQQPSPTTLAKRARTSCSPNQTPVCQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFQLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTSKQHKILHSHQGARYMESSLQKRPQFSFPDIFRSGKYDKISQNGNVKLEEEFIFSPQFAAPVAHGQELSSRALSLLSAQSQIPSRPSEENPLASSFSFHSISEMPLDISNEGKYVVDESFPCEMNHKEFIKSESAMLSDAGHPDHRASSDDICSPLEHGSTVDLFQLSSNLERVEQKRNSVLVKWENENSCFPAL* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1810 448 Gene3D - 164 234 IPR036893 GO:0003677|GO:0005634
Ahy5g1810 448 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 56 444 - -
Ahy5g1810 448 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 56 444 IPR044817 GO:0003677
Ahy5g1810 448 ProSiteProfiles Zinc finger SBP-type profile. 170 247 IPR004333 GO:0003677
Ahy5g1810 448 Pfam SBP domain 173 246 IPR004333 GO:0003677
Ahy5g1810 448 SUPERFAMILY SBT domain 171 252 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1810 Ahy-Chr5 74546376 74550242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1810 100 447 SBP-box Gene Family AT1G69170 39.062 3.83e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ahy5g1810 SBP 4.70E-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1810 - - adu:107489502 880.167