Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1797 ATGGGTTACGAAGACGATCCGTACCGCGATGAGGACGGAGAATCCTTGATGGATTACGACGACATTCAATCCGATCCCGATCCGGAGCCCCACCACGACGATGCGCTCCTCGATGATTACGAGGACGAAGGAGACGGTGGCGATTGGCTACGCCGCGAGCGGTCGCAGACTCCGGTCTACGACAACGATTCGTCCAAGTCGAAGCCCAGGAAGAGGCTCATCAAGAAGGGAGACACCGGGAGGCAGTCGGTGGCGCCGGAGCTCGAAGATGAGGTGGCGGAGGATGAGTATGAAGGCGGGGCGAGGTTCGCGAGGGAGGGTTCGGAGGAAGGGAGGAAGAGGAAGAAGGGGAAGGAGGGTGGAAGTATGAAGAAGGAAAAGAGGCTTAAGGGGGAGAAAAGATTTGCGAGTGGTGGAAGTGGGAAGAGCGGGTCCAAATTCGGGGGATCTAAGAAAGGGTTTGGTGGAAAAGGAGGGAAGGATCATGACGGTGAAGTTAAGGAGATGTGGGATACTATTGCTGGCGGTGATTCTGAGGATGATCATGAGGGTGTTAGGAACGTGGATGATGACAACTTCATAGATGACACGGGGTTGGAAGCTGGTGGTTACTATGGCAGTGATGAACCTCGTTCTCCTGGTGATGATGCTCCCCAGGCAGAGGAAGGTGAAGAGGATGATGAAATTAAGGATCTTTTCAAGATAGGTAAGAAAAAGAAGAAGAATGAGAGAAGTCCTGCAGAAATAGCTTTATTAGTTGAGAACGTCATGGCTGAGCTTGAGGTCACAGCTGAAGAGGATGCTGAACTTAATAGACAGGGGAAGCCTGCCATTAATAAACTAAAGAAGTTGGATCTTCTAACAGAAGTCCTCTCGAAGAAACAGCTCCAATTAGAGTTTTTGGACCATGGAGTACTAACTTTGTTGAAGAATTGGCTTGAGCCACTTCCTGATGGAAGCTTGCCAAATATCAACATACGCACGGCAATTTTGAATATTTTAAATGATTTTCCTATTGACCTAGAGCAGTATGATAGAAGAGAACAGCTGAAGAAGAGTGGTCTTGGGAAGGTGATCATGTTCTTATCGAAGTCTGACGAAGAAATCAATGTAAATAGAAAACTAGCTAAGGAACTGGTTGACAAATGGGTAAGTAATCTGTGAAACTCTTCCTTCAGCATGAGTAATTTTCCTTTCAGGAAGCCAACTGTTAAAAAGCTGGCAAATAAAGTAGCAGGGATGGAATCTAGAGATGGTGATCTTGATTTGGAGTTTTCACAGCCTAGGTCTGGACGGTCTTCTTCAAGGCAACATGCATCAAGGCCAGAAGCAACACCTTTGGATTTTGTGATCCGTCCCCAGTCTAAAATTGATCCAGAAGAAGTTAGAGCGCGAGCAAAAGCTGCTGCACAAGATCAGCAGAGAATGAAGATGAATAAGAAGTTGCAGCAGTTGAGGGCACCAAAGAAGAAGCAGCTTCAAGCTACAAAACTAAGTGTGGAAGGTCGTGGCATGATCAAATATTTGTAG 1530 0.4706 MGYEDDPYRDEDGESLMDYDDIQSDPDPEPHHDDALLDDYEDEGDGGDWLRRERSQTPVYDNDSSKSKPRKRLIKKGDTGRQSVAPELEDEVAEDEYEGGARFAREGSEEGRKRKKGKEGGSMKKEKRLKGEKRFASGGSGKSGSKFGGSKKGFGGKGGKDHDGEVKEMWDTIAGGDSEDDHEGVRNVDDDNFIDDTGLEAGGYYGSDEPRSPGDDAPQAEEGEEDDEIKDLFKIGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLDLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILNILNDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEINVNRKLAKELVDKWVSNL*NSSFSMSNFPFRKPTVKKLANKVAGMESRDGDLDLEFSQPRSGRSSSRQHASRPEATPLDFVIRPQSKIDPEEVRARAKAAAQDQQRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMIKYL* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1797 508 MobiDBLite consensus disorder prediction 417 489 - -
Ahy5g1797 508 MobiDBLite consensus disorder prediction 453 469 - -
Ahy5g1797 508 MobiDBLite consensus disorder prediction 155 193 - -
Ahy5g1797 508 ProSiteProfiles TFIIS N-terminal domain profile. 307 390 IPR017923 -
Ahy5g1797 508 MobiDBLite consensus disorder prediction 1 23 - -
Ahy5g1797 508 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 302 391 IPR035441 -
Ahy5g1797 508 MobiDBLite consensus disorder prediction 426 440 - -
Ahy5g1797 508 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 246 390 IPR035441 -
Ahy5g1797 508 MobiDBLite consensus disorder prediction 45 68 - -
Ahy5g1797 508 Pfam TFIIS helical bundle-like domain 333 384 IPR017923 -
Ahy5g1797 508 MobiDBLite consensus disorder prediction 1 228 - -
Ahy5g1797 508 PANTHER PROTEIN IWS1 HOMOLOG 1 1 508 - -
Ahy5g1797 508 Coils Coil 253 273 - -
Ahy5g1797 508 MobiDBLite consensus disorder prediction 97 135 - -
Ahy5g1797 508 PANTHER PROTEIN IWS1 HOMOLOG 1 1 508 IPR044204 GO:0009742|GO:0032784
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1797 Ahy-Chr5 71352580 71356367 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Ahy5g1797 Med26 9.40E-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1797 K17498 - gmx:100801805 696.041