Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1748 ATGTTAAATGTTGATGTGATTGGGAACAAGAAAAGGAAGAGATGTGGGAGGGTTTTCAGGTTCAAGAACTTCGGCGAACCGGGTTACCCAGTTATGTTTACTGGTCCATTTCGTGAGAATGTGAATGCACTTCTTGAATATGCGAATTCGGAGAGTAACTTGGGAATGGGAATGCCAATGTGGTCTTTTCAGCTTGAAGTTCATCACCACCCTCCTTTGCATATTTTCTTGTTTGTGATTGAAGAACCAATTGAAGCTTCTTTGAATCGCCACTGCAAGCATTGTCAATATGTTGGATGGGGCCACCATTTCATTTGCAACAAGAAGTATCATTTCGTATTACCCTCGAAGGAGGCATTGGCTACATGCTCGAGTTGTGAAGGGTGCTGTGATGCTATTGCCACAATCAACAACAACAACAACAACAACAACAGTAATAATAATGGTAAGTCCAAATTAATAGAATTACAGGGCCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGCCATTTGCTATGTGTCAATGGCTTGGAAACCGGTTCCAATTTGGCTGGCAACCAGATCATGGACTTTTGGAATCGTTTGTGCATTGGATTGCAAGCAAGGAAAGTGAGTTTGAATGACACTTCACAGAAAAGAGGCATGGAACTTAGACTTATAAATGGAATAGCATATAGTGAGCCATGGTTCGGTCGTTGGGGCTACAAATTTGGTAGAGGTTCCTTTGGTGTGACACAATCCATGTACCAAAAAGCCATAGAAGCAATAAGGAGCATGCCACTCTACTTGCTGATACACCACATTGGCGCAAATAATTTCAACCACCACGAAGTGCCCGTCATTTTCTCACGCTACCAAACCCTGTCCGGCCAATCGCTAGTCACACTCGGCGACTTATTTCGCTACATGCTCGAGCTAAAGTCGCGCCTCCCGCGGGAGACTCGAGTTATTGGTAACAATAATTATAGTTGTTCCTACAACAACACTAGTAGTACTAGTGCCAGTGCATTGGTTGAGTCCAATAATAATTGCCGTTGGTCACCTAAGAGGATTGAAATGGCAACAAGGGTAATTGTTGAGGCATTGAAGAGAACAGAGTTTAGATGGATTTCAAGACAAGAAGTTAGGGATGCCGCACGTGCTTACATTGGTGACACTGGTTTATTGGATTTTGTGCTAAAGTCACTAGGGAATCATGTTGTTGGGAACTACTTGGTACGTAGGAGCTTAAATCCTGTTACCAAAGTTTTGGAGTATTGCTTAGAAGACATTTCCAATCATGTTTACCATAATTGCAATGAAGGTAGTTTGGCCATCAATAATAGTAATAGTAACAATAATAATAAAATTAAGGATAAGTACAAGATTTCAAGGGCTCAACTTATGAAGGACATGCTTTATTTGTATAAGTACATCCTAATTGACCCTAAACCAATGATGGGGTTGGAGTTTCTCTCAGCCATACCGTTGGCGGCTAGGATAATTCTCGACACCAAGTTTCTCGTCAAAGACTACTCTGGCGAGGTTCCGACTTTTGGAGTTGAGTTAGGCTCGGACGGAAAACTGAACCTTTATTGCACAATTTTGTTGCGGAACAATTCATGCATTGATGAGGAGTTCTTGAGTAAGGCTATGCCACCCTATGAGTGCATCACTTTGGGAAGCAATGCTACAATCAATGAATTGAAGTTAGAAGTTGAGAGGAATTTTAGGGAAATTTATTGGGGACTAAGGGGATTTGTGGTAGAATCAATTGGGAATTTTAGTGCCAATAATATTATTAGTAATAATGGGAAAGATATGGTTTTGGGGTTAATTGAAGTGATGGGTGGGAAAATAGTGTTAGAGGGTTGGATTGGTGAAATAATTGGAATGATGAATAACAACATGATGATTGGCCAAATGTGTGAGAATGATCCAAAGAATGGGATTGTGGAGTGCACTTGTGGAACAAAAGAAGATGATGGAGAGAGGTTGGTGTGTTGTGATATTTGTGAAACTTGGCAGCATACAAGGTGTGTTCGAATTCCTAATGATGAAGAAATTCCTCACATTTTTCTTTGCAAAAGGTGTGAGCAAGAAATTGTTATGTTCCCTTCATTGCCATAA 2115 0.4071 MLNVDVIGNKKRKRCGRVFRFKNFGEPGYPVMFTGPFRENVNALLEYANSESNLGMGMPMWSFQLEVHHHPPLHIFLFVIEEPIEASLNRHCKHCQYVGWGHHFICNKKYHFVLPSKEALATCSSCEGCCDAIATINNNNNNNNSNNNGKSKLIELQGHMMHGVFHSNGFGHLLCVNGLETGSNLAGNQIMDFWNRLCIGLQARKVSLNDTSQKRGMELRLINGIAYSEPWFGRWGYKFGRGSFGVTQSMYQKAIEAIRSMPLYLLIHHIGANNFNHHEVPVIFSRYQTLSGQSLVTLGDLFRYMLELKSRLPRETRVIGNNNYSCSYNNTSSTSASALVESNNNCRWSPKRIEMATRVIVEALKRTEFRWISRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISNHVYHNCNEGSLAINNSNSNNNNKIKDKYKISRAQLMKDMLYLYKYILIDPKPMMGLEFLSAIPLAARIILDTKFLVKDYSGEVPTFGVELGSDGKLNLYCTILLRNNSCIDEEFLSKAMPPYECITLGSNATINELKLEVERNFREIYWGLRGFVVESIGNFSANNIISNNGKDMVLGLIEVMGGKIVLEGWIGEIIGMMNNNMMIGQMCENDPKNGIVECTCGTKEDDGERLVCCDICETWQHTRCVRIPNDEEIPHIFLCKRCEQEIVMFPSLP* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1748 704 Pfam PHD-finger 649 695 IPR019787 -
Ahy5g1748 704 SUPERFAMILY FYVE/PHD zinc finger 633 696 IPR011011 -
Ahy5g1748 704 CDD PHD_MMD1_like 648 693 - -
Ahy5g1748 704 ProSitePatterns Zinc finger PHD-type signature. 649 693 IPR019786 -
Ahy5g1748 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 698 IPR013083 -
Ahy5g1748 704 SMART PHD_3 648 694 IPR001965 -
Ahy5g1748 704 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 704 - -
Ahy5g1748 704 ProSiteProfiles Zinc finger PHD-type profile. 646 696 IPR019787 -
Ahy5g1748 704 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 8 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1748 Ahy-Chr5 60106552 60113160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1748 10 704 PHD Transcription Factor Family AT5G22260 50.640 0.0 661
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ahy5g1748 PHD 2.40E-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1748 - - adu:107489498 1374.38