Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1745 ATGAGCGATCACTTGGTACTATTCGTCGACCGTCTCGGGCGCCCCGCCGATCCCGTCGCGCAGCCCGCTCAGCTCCCAGTTGATCCCTCGCCGCCGGCGGCGGAAGTGGTCCACGGATCTTCTGGATCCGCTCCGGCAGCGGATCGCGACGTTGAGTTGGAACACGGCGGCGATGATGACGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATTTGCCAGGAGGAGGACGGTGTCTCCAATTTGGAAAGCCCCTGCGCCTGCAGCGGAAGTCTGAAGTATGCACACAGAAAGTGTGTCCAGCATTGGTGCAATGAGAAGGGAGACATAACTTGTGAGATATGCCATCAGCCTTACCAACCTGGTTATACTGCTCCACCACCACGCCCTCAGCCTGAAGAAACCACCATTGACATAGGAGGAGGCTGGACAATATCTGGCACGCCTTTGGACTTGCGTGATCCTCGACTATTGGCAATTGCAGAGGCTGAACGCCAATTTTTGGATGCGGAATATGATGAATATGCTGCTTCTAATGCCAGTGGAGCTGCATTTTGCCGCTCTGCAGCTCTAATTTTAATGGCCCTTTTACTCTTGCGGCATGCACTTTCTGTCACTGATGGTGATGCTTCTGATGATGACCCATCCAATTTTTTCTCCCTTTTCTTGCTACGTGCTGCTGGATTTCTTTTACCTTGCTATATAATGGCTTGGGCAATTAGTATTCTGCAACGTCGGCGACAGAGACAGGAAGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTTGTCCTACAGTCTGGGCAGCACAGGGGGCTACAATTTGCCATAGCCCCAGGACCACCACCCACTGTACAGCAGGAACAAGTGTGA 870 0.5368 MSDHLVLFVDRLGRPADPVAQPAQLPVDPSPPAAEVVHGSSGSAPAADRDVELEHGGDDDEEPLIQMAECRICQEEDGVSNLESPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPQPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDASDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQHRGLQFAIAPGPPPTVQQEQV* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1745 289 CDD RING_CH-C4HC3_MARCH 70 116 - -
Ahy5g1745 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 278 - -
Ahy5g1745 289 SUPERFAMILY RING/U-box 68 120 - -
Ahy5g1745 289 Pfam RING-variant domain 70 115 IPR011016 GO:0008270
Ahy5g1745 289 Coils Coil 158 178 - -
Ahy5g1745 289 MobiDBLite consensus disorder prediction 16 59 - -
Ahy5g1745 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 125 IPR013083 -
Ahy5g1745 289 SMART ringv_2 69 116 IPR011016 GO:0008270
Ahy5g1745 289 Pfam Protein of unknown function (DUF3675) 121 240 IPR022143 -
Ahy5g1745 289 ProSiteProfiles Zinc finger RING-CH-type profile. 62 122 IPR011016 GO:0008270
Ahy5g1745 289 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 278 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1745 Ahy-Chr5 59962100 59965066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1745 58 115 C3H Transcription Factor Family AT2G37950 42.623 4.77e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1745 - - gmx:100779674 472.241