Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1720 ATGGAGGAAAGGAGGTTTGTATGCAAGTATTGCAGTAAGAAGTTTCCTTGTGGCAAGTCTCTTGGGGGTCACATAAGGACTCACATGATGAATGAACACTCTCTATCAGCAACAATGCCCTATGCTAATATCAATTCATCTTCTTCTTCTTTAATACTCGAGTTTGAATATCCTAACAGGAAGAGGAAGCACGATTTCTTGGCAACTAATGGTTCTAATTCCAGCTATGGCGGTAGTGGATATGGTTATGGACTCAGAGAGAATCCGAAGAAAACAAAGAGTTTTGTGGATGCCAATCACAAGAAGTTATGTAAAGAATGTGGAAAAGGTTTTCCATCGCTTAAGGCTCTCTGTGGTCACATGGCTTGTCACTCAGAGAAAGAAAGAGGAACCAATTCCAATTCCAATAATAGGTTTCAGTTTGAATCCAATTCTGGGATTAGTGAGAAGCAGAAATTGGTTATGGATAGTCATTCTGATACTGAAACCTCTGTTCCAATTAGGAGATCCAAGAGGATGAGATTCAGGAACCTCTCCAAAAACAACCGCAAACCTTTTTGTTCTTCTTCTTCTTCTTCTTCTGTGTCCGAGGTTGAGCAGGAGCAAGAAGAGGTTGCTAGGTGTTTGATGATGCTGTCCAAGGATAACTCCTACAAGGGTCAATTCGTGCTTTTCGCTGAGTCGTCTGATAACAAGTCGATTGTTCTTGAGGGGAAATCGCCTTCTGTTGACACCTACAATAAGGTTATGGTTGTGGATCATGAGAAGAATCAACACAAGGGGGCTGAGATTGGTTATAATTCGGACAATTCGGATTCAGGCTATTTCAGATATGGTCCCAAGAAGAATGTAGATTCTGATGATGATGATGGTGAAGTTAACAACAATGTTGATTCAAGGAGTGGTGTAAGAAGCAGAAACAATTCCTTGTTCAAGAAAATGGCAGCTGCCAACGATTCTTCGAGCAAGAAGAAGAACAAACCAAATGGCATTACCGGTTTCAGTGACAAGCATTGGAAGGTTGAGTCTTTCACAACTGAAGATTTCTCTGCATTTGAAATCGATGAGTTTAATAACAACAGCACAGACACTGATTCATACCCTGCAGCAGCTGCTAATGCATCAAAATCTCGCTGCAACAAGAAGATCAACGAGAACAACAAGGGTAAGACTAAGAAAAAGAGTAAGAAGAAGAAGTTGAAGTCAAAGAAGAACAAGGAACATGAGTGTCCAATTTGCAACAAAATGTTTAGGTCAGGACAAGCATTGGGGGGTCACAAAAGATCACATTTTGTTGGAGGATCTGAAGAGAACACACTGGTCATTAGGCCAGCTCCTGCTACAGTTGCTCCATGCCTAATTGATCTCAATTTACCTGCTCCTGTTGATGATGCACCTTTTTGA 1404 0.4103 MEERRFVCKYCSKKFPCGKSLGGHIRTHMMNEHSLSATMPYANINSSSSSLILEFEYPNRKRKHDFLATNGSNSSYGGSGYGYGLRENPKKTKSFVDANHKKLCKECGKGFPSLKALCGHMACHSEKERGTNSNSNNRFQFESNSGISEKQKLVMDSHSDTETSVPIRRSKRMRFRNLSKNNRKPFCSSSSSSSVSEVEQEQEEVARCLMMLSKDNSYKGQFVLFAESSDNKSIVLEGKSPSVDTYNKVMVVDHEKNQHKGAEIGYNSDNSDSGYFRYGPKKNVDSDDDDGEVNNNVDSRSGVRSRNNSLFKKMAAANDSSSKKKNKPNGITGFSDKHWKVESFTTEDFSAFEIDEFNNNSTDTDSYPAAAANASKSRCNKKINENNKGKTKKKSKKKKLKSKKNKEHECPICNKMFRSGQALGGHKRSHFVGGSEENTLVIRPAPATVAPCLIDLNLPAPVDDAPF* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1720 467 MobiDBLite consensus disorder prediction 360 380 - -
Ahy5g1720 467 Pfam C2H2-type zinc finger 104 126 - -
Ahy5g1720 467 Pfam C2H2-type zinc finger 5 29 - -
Ahy5g1720 467 Pfam C2H2-type zinc finger 408 430 - -
Ahy5g1720 467 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 464 - -
Ahy5g1720 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 408 430 IPR013087 -
Ahy5g1720 467 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Ahy5g1720 467 SUPERFAMILY beta-beta-alpha zinc fingers 103 430 IPR036236 -
Ahy5g1720 467 MobiDBLite consensus disorder prediction 387 404 - -
Ahy5g1720 467 MobiDBLite consensus disorder prediction 360 407 - -
Ahy5g1720 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Ahy5g1720 467 SMART c2h2final6 102 124 IPR013087 -
Ahy5g1720 467 SMART c2h2final6 6 28 IPR013087 -
Ahy5g1720 467 SMART c2h2final6 408 430 IPR013087 -
Ahy5g1720 467 MobiDBLite consensus disorder prediction 261 335 - -
Ahy5g1720 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Ahy5g1720 467 ProSitePatterns Zinc finger C2H2 type domain signature. 410 430 IPR013087 -
Ahy5g1720 467 MobiDBLite consensus disorder prediction 281 295 - -
Ahy5g1720 467 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Ahy5g1720 467 MobiDBLite consensus disorder prediction 296 329 - -
Ahy5g1720 467 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 464 - -
Ahy5g1720 467 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1720 Ahy-Chr5 55242077 55244425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1720 1 464 C2H2 Transcription Factor Family AT1G26610 39.029 6.00e-85 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy5g1720 zf-C2H2_6 4.60E-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1720 - - adu:107489539 848.195