Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1703 ATGAGACTCTTTTGGCAGATTTGGGATACAACAGGACAAGAAAGGTTCAATAGTTTAGGTGCTGCATTTTATAGAGGTGCAGATTGTTGTGTTTTGGTGTATGATGTAAATGCACACAACACATTTGACACACTAAACAATTGGCATGATGAGTTCATTAAGCAGAATTCTTGGTGGCAGTCATGGTGTGCCTCAAGTACATTACAAGGGCAGCTTCTGTGGAATTACTGCATTTTAGATGAAGGGCATATAATCAAGAATGCTAAGTCCAAAGTTACACTTGCTATAAAGCAGTTAAAAGCCCAACACCACTTGATATTGAGTGGGACTCCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCTAGATTTCTTGGAACAGAGAGACAGGTAAAGTCTTATTTTCCTTTCCTCATACTAATTATTACTTCTGCTCTACTGATTTGGGACGAAAAGAATTTGAAGAGGCTTAAAAGCAGTGGAAAGTTAAAGAAAGTTCTTTGGAGACTAGGAATTTTGGTGGGTTACTTTTTCAAGCTCATGCTAATGCTATCAGAAATGTTATGA 585 0.3744 MRLFWQIWDTTGQERFNSLGAAFYRGADCCVLVYDVNAHNTFDTLNNWHDEFIKQNSWWQSWCASSTLQGQLLWNYCILDEGHIIKNAKSKVTLAIKQLKAQHHLILSGTPIQNNIMDLWSLFDFLMPRFLGTERQVKSYFPFLILIITSALLIWDEKNLKRLKSSGKLKKVLWRLGILVGYFFKLMLMLSEML* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1703 194 Gene3D - 2 66 IPR027417 -
Ahy5g1703 194 Gene3D - 67 173 IPR038718 -
Ahy5g1703 194 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 66 129 IPR014001 -
Ahy5g1703 194 ProSiteProfiles small GTPase Rab1 family profile. 1 179 - -
Ahy5g1703 194 Pfam Ras family 6 57 IPR001806 GO:0003924|GO:0005525
Ahy5g1703 194 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 71 138 IPR044972 GO:0003677|GO:0016887|GO:0017025
Ahy5g1703 194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 146 IPR027417 -
Ahy5g1703 194 SMART rab_sub_5 6 99 - -
Ahy5g1703 194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 56 IPR027417 -
Ahy5g1703 194 Pfam SNF2-related domain 65 142 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1703 Ahy-Chr5 50474753 50486779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1703 74 133 RAD5 or RAD16-like Gene Family AT5G22750 50.000 9.07e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy5g1703 SNF2_N 2.70E-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1703 K15192 - adu:107469552 231.106