Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1658 ATGAATCTTCCTATTGATCCTGTTCAGAAAATCTCTCCATGGAAGGAAACTTGGAGTATTGAGGCTAAGATCTTGACCATTTGGGAAGATGCTAGCATTGTTAAGGAAAATATGCAGAAAATGTTACATATGGTGTTGATGGATAAGCAGCACCACAAGGTTCAAGCAACTGTTGACCATGATTTGATCACAACTTTTATTCATCAGTTAAAAGAAGGACATGTATTCATTATTTCTGATTTCAAAGTGATACCTAATAGTGGATTGGTTAGGGTTACAAGACATCGATTCCGGATCCTTTTCAAGTGTAGTACCTCTGTTGTTGCAGCTGAAGATAGAGACATACCTAATCCTGGTTTATGTTTAACCTCTGTGGACGAGATTCTTCAAAAGCGCTCTGATTATGAGTACCTAATAGATTTTGTTGGTGTTCTGTGCGGATTGAAAAGGAAAAGTGATGTTGAGTTTAATGGAAAGATATTCAGAGTTATTGTCCTTGCAGTTTTTGCAGATGGGAAGAAAATCCCCTGTATTCTTGTTGGTGAGTGTTCTGCTCTTTTGGATATCAATAGTTTGAAAAAGTATCAGAGAGCACCAGTTCTTATTCTGGAATCTTTCAAGATCCAAGTCAATGGAGATAAAGTTAGTCTTCAAAATGTCATCAATGTTTCTCGGGTTTCAATCAACCGTGATATGCAGGAAACAGTGGATTTTCTGAATGGATACCATATCGCAAGCCATGATTTCAGTAGACTGTGTAGTGATGAGAATGGGGATTTAGTATGTGTAATCGATGATGAATCTTTTGACTGGAAGCTAATGCGGACTATTGCTAATCTTAAAGGAAACAATGAGGATGGACAATTCTTTGTGGTTGGAAAAATTAAAGAGATTGTTGAAGATCCAGAGTGGTGGGTCTTTTGTTGTGTTTGTGGTCATCCAATTGTTGGTGATGATAATGTGTTTCATTGTCAGCTGTGCGGGAAAGAGGTCCAGCATTTTATGACCAGTTACAGGATTAAGATACTTGTTGAAGATGGTACTTCTTGTGGAATGTTTGTGTTGTTAGACAGTGCGGCGACTAAGCTATTAGGGAGAACCTGTTCTGATGTGTTTTTGTTGTTAGAAGATGAAATGGAGAAAATTGAGCACCCATACTGTCCAAAAATTTTTCATCAACTCATTGGGAAAGAGATTGTTTTCAAAGTTCAGGCAAAGCGGATTAACAGTCCCGGTTATTGTGGTACCTTTAAAATCATCAATGTCATTAGTGATGCACGTTTTTTCAGGAAAGTTCAGTCTGATCATTGCATCAAGGTTAGTGCGGTCTCTTTAAGTTAG 1341 0.3781 MNLPIDPVQKISPWKETWSIEAKILTIWEDASIVKENMQKMLHMVLMDKQHHKVQATVDHDLITTFIHQLKEGHVFIISDFKVIPNSGLVRVTRHRFRILFKCSTSVVAAEDRDIPNPGLCLTSVDEILQKRSDYEYLIDFVGVLCGLKRKSDVEFNGKIFRVIVLAVFADGKKIPCILVGECSALLDINSLKKYQRAPVLILESFKIQVNGDKVSLQNVINVSRVSINRDMQETVDFLNGYHIASHDFSRLCSDENGDLVCVIDDESFDWKLMRTIANLKGNNEDGQFFVVGKIKEIVEDPEWWVFCCVCGHPIVGDDNVFHCQLCGKEVQHFMTSYRIKILVEDGTSCGMFVLLDSAATKLLGRTCSDVFLLLEDEMEKIEHPYCPKIFHQLIGKEIVFKVQAKRINSPGYCGTFKIINVISDARFFRKVQSDHCIKVSAVSLS* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1658 446 Gene3D - 265 422 IPR012340 -
Ahy5g1658 446 Pfam Domain of unknown function DUF223 44 138 IPR003871 -
Ahy5g1658 446 Gene3D - 121 245 IPR012340 -
Ahy5g1658 446 PANTHER BNAC01G35430D PROTEIN 304 433 - -
Ahy5g1658 446 CDD RPA1_DBD_A_like 19 107 - -
Ahy5g1658 446 Gene3D - 3 112 IPR012340 -
Ahy5g1658 446 SUPERFAMILY Nucleic acid-binding proteins 4 113 IPR012340 -
Ahy5g1658 446 Pfam Replication factor-A C terminal domain 291 407 IPR013955 -
Ahy5g1658 446 PANTHER BNAC01G35430D PROTEIN 20 148 - -
Ahy5g1658 446 SUPERFAMILY Nucleic acid-binding proteins 279 407 IPR012340 -
Ahy5g1658 446 PANTHER REPLICATION FACTOR A 1, RFA1 304 433 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy5g1658 446 PANTHER REPLICATION FACTOR A 1, RFA1 20 148 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1658 Ahy-Chr5 45768642 45771951 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1658 1 380 Core DNA Replication Machinery Family AT5G08020 20.000 5.68e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1658 - - ahf:112771159 809.29