Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1657 ATGTTGGGAATGAATAATCCTGTTGATTTGGTGGAGAAAATCACTCCTTGGAGGGAATCATGGAAGGTGCATGTTAAAGTTGTGAAGTTGTGGTACCAGAAGAATACTGCTTTGGATCCTTCTCAAAATCTGTTGCATATGGTCTTAATGGATGAGAAGTTACACAAGATCCAAGCTACCATTAGAGATGAGCTTATATCAAAGTTTGCTGTGTCTCTAAATGAAGGTGATCTGTATTTGATAACCAATTTTACAGTTTTGCCAAACAGTGGTTTGAACAGAGTTACCAAACATCGGTTCAGGCTTTTGTTCCAATACAAGACCTCTGTTGTTTCTGTGGTGTCTCCAAGGATAACTCATTCCGGGTTGTGTTTTACATCAATAGATGAAATTGATCAAATGACAAAGGACCACAATTTCCTTATTGACTTTGTTGGGATCATTACTGGTGTTCGAAAGGAAAGAGATGTAGCATCATATGGGAAGCTCATCAAAGCAGTTGTGCTAGAAGTTTTTAGTCATGGGAAAAAGGTCCAATGCAATGTGTTTGGAAATGCTTGTGATCTCTTGGAATATGAAAACTTACAAAAATATCCAAGATCTCCACTGATTGTCCTTGAGTCCTTTAAAATCAAAGCAATTGAAGGTGGAGTAATTCTACAGAATGTGATCAATATCTCTAGATTATTCATTAATCCAGACATTCCTGAGTCTGTTGAGTTCCTAAGCAGATTTAGTGTAGCCAGTTATGGATTCTCAAGACTTGTGACCAATGACCTTGGATACTTAACTTCTAAAGTTGATGGTGATTATTTCAATCCCAAAGAGATCAGTAGTATTCAAGATCTTGATGTAGATAACAGGGATGCTCATTACTTTGTAATGGGGACAATTAAGGAAGTTATGGATGAACCAGATTGGTGGTACTACTCATGTGTATGTGGTCATCCTGTTGTTGACCATGAGGATCTCTACCTTTGTGATGCTTGTTGTTCATGTGTTGAACATGTTATGCTCAAGTATAGGATTCGGGTAAAGATTCACCATGCTGGGTGTGATGTTTTGTTTGTTCTGCTTGATAATGCGGCAACAAAACTATTTGGAAAAACCTGTTCTGAAGCATTTCTCAGGATAGACGAAGAATTCCCTCTTGATCCTAGTGTGCTTGCAGTCTGTCGGTCATATTCTCCACAAATGTTTGGTGATGTTGTTGGAGAGCATAAAGTTTTCAAGGTTGAAATTCTTCCTGTGGTTGATCCAGATTACTCCGGGTCCTTTAAAATTGTAAATGTGTTTAGTGATAATTCTGAACCAGCTACAAGTGATGATTATATGAATGCAAGGCTTCATGATCCGATTTTTCCACCAATCTACGATGCCTGTTTGCAGTATGGAATTGGGGAAGATTACAAGACTCAAGTAGTTTGTGATAATTCTATTCAATCAGAAACTATTGAAGATATTATTACTGATCTTATTTCACCTAATCGCTGTTATTCTGATGTTGAGAATGGTGGTTTTGTTTTCATTCTTGGAACTATATCATCTGTTTTCAAGAATCATAAGTGGTGGTTCTCAACTTGTTTATGTGGTTCTCTTGTGTCAACTAATAAACAAATTTTATCATGTGATCTATGTCAGCTTCAATGTATTGATGCTGTTCCAAGATTCTGCTTGAAGATTGTAGCTTCTCATGCAAATGGCAACAATATATTTGTTCTCAAAGATCGTGAGGTTGTGCAACTGATAAAGACAAGATGCTCCACCTTTTTGGATAGACACCCAGAGTTGAATCAGGAATCTTATTGCAAAGTTGTTCCATTGAAACTCATTTCAAGTCTTTTGCACAAAAAAGTTGTGTTCATGGTTGATGCTAGGCCTGTGGGTTATGAGATGAATCGATCTGTGTATATTGTTCAACAAATCTGGGATGATGCCTCTGTTATTAATGTTTTTGAGTCCGCTGCTGAGATGAATGAGCATAAGATTCATGTTCTGGTTGATTCTATCGCTGAGGTTGAAGATGCTTTTAGCCAATGTGGAAGTGATCATGAGGCTGTTGAAGATCTAGATGCATTTTAG 2082 0.3742 MLGMNNPVDLVEKITPWRESWKVHVKVVKLWYQKNTALDPSQNLLHMVLMDEKLHKIQATIRDELISKFAVSLNEGDLYLITNFTVLPNSGLNRVTKHRFRLLFQYKTSVVSVVSPRITHSGLCFTSIDEIDQMTKDHNFLIDFVGIITGVRKERDVASYGKLIKAVVLEVFSHGKKVQCNVFGNACDLLEYENLQKYPRSPLIVLESFKIKAIEGGVILQNVINISRLFINPDIPESVEFLSRFSVASYGFSRLVTNDLGYLTSKVDGDYFNPKEISSIQDLDVDNRDAHYFVMGTIKEVMDEPDWWYYSCVCGHPVVDHEDLYLCDACCSCVEHVMLKYRIRVKIHHAGCDVLFVLLDNAATKLFGKTCSEAFLRIDEEFPLDPSVLAVCRSYSPQMFGDVVGEHKVFKVEILPVVDPDYSGSFKIVNVFSDNSEPATSDDYMNARLHDPIFPPIYDACLQYGIGEDYKTQVVCDNSIQSETIEDIITDLISPNRCYSDVENGGFVFILGTISSVFKNHKWWFSTCLCGSLVSTNKQILSCDLCQLQCIDAVPRFCLKIVASHANGNNIFVLKDREVVQLIKTRCSTFLDRHPELNQESYCKVVPLKLISSLLHKKVVFMVDARPVGYEMNRSVYIVQQIWDDASVINVFESAAEMNEHKIHVLVDSIAEVEDAFSQCGSDHEAVEDLDAF* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1657 693 Gene3D - 265 421 IPR012340 -
Ahy5g1657 693 Gene3D - 473 650 IPR012340 -
Ahy5g1657 693 CDD RPA1_DBD_B_like 143 245 - -
Ahy5g1657 693 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 23 375 - -
Ahy5g1657 693 Gene3D - 7 114 IPR012340 -
Ahy5g1657 693 SUPERFAMILY Nucleic acid-binding proteins 502 628 IPR012340 -
Ahy5g1657 693 SUPERFAMILY Nucleic acid-binding proteins 10 113 IPR012340 -
Ahy5g1657 693 SUPERFAMILY Nucleic acid-binding proteins 272 412 IPR012340 -
Ahy5g1657 693 PANTHER REPLICATION FACTOR A 1, RFA1 23 375 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy5g1657 693 Pfam Domain of unknown function DUF223 47 139 IPR003871 -
Ahy5g1657 693 CDD RPA1_DBD_A_like 22 110 - -
Ahy5g1657 693 Gene3D - 118 251 IPR012340 -
Ahy5g1657 693 SUPERFAMILY Nucleic acid-binding proteins 125 247 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1657 Ahy-Chr5 45762154 45766330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1657 2 371 Core DNA Replication Machinery Family AT5G08020 19.537 5.28e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1657 - - ahf:112695694 1403.65