Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1626 ATGGAGAGGCACAGATGCAAGCTTTGTTCGAGGACATTCGCCAATGGCAGAGCCCTCGGTGGTCACATGAAGGCTCACTTAGCCACGCTTCCTCTGCCACCCAAGCCTCATCAACCACCTCCTCAACCACTTTCTTTTGAGTACTCCTCTTCTTCTTCCTCTTCAGAATCAGAACACGATGACGATGATGATGAAGAAAAAGGTTATGGGTTAAGAGAGAACCCAAAGAGAAGTTTCAGGGTTGCAGATCCTGAATTCTCTTTCCCTGCTGCTGATGATGCTACTGTAGTGGTCCAAGACAGAGAGAGCGAGACTGAGTCAAAGAACAAACCAACTCGGACACGAAGACGATCCAACCGTACACGAAAATCCTCCATTATCAACCTTACAAACAAGAGGACTAAGCTCATGAGTTTCATGGAGTCACCAGCATCAATAGCAACAGAGGCAGCAGAGCCTGTTAGCTCCGTTTCCGATACTTCGCCGGAAGAAAACCTGGCCATGTGCCTCATCATGCTGTCAAGGGACAAATGGAGAAAGACAAGTGTTGAAGAAGAAGAAGAGATGAAGTTGAAGAACAAGAAGGTTCTTCGAGGGAAGCATCATCATCATCATCATCATCGTCTGCAGTGTGACAAGTGTGGGAAAACGTTTCGATCTTCAGGGGCATTGGGGAGCCACAGAAGCATATGCCTCTGTGATGAAGCTGATGGAAGTGAAAGAATCTTTCAATGCCCGTATTGTTCAAAGGTTTTCGGGTCGGGTCAAGCACTCGGTGGCCATAAGAGATCTCATCTTCTCCCATCTTCTTCTTCTTCTTCTCCTGCTTCCATTATCAATGCTAATCTTAGATTGAAACAACAAAGCTTCATAGATCTCAACTTGCCAGCTCCACCTGAAGAAGACGACCTTAGTGTTCTCTCCGATGCATAA 933 0.4641 MERHRCKLCSRTFANGRALGGHMKAHLATLPLPPKPHQPPPQPLSFEYSSSSSSSESEHDDDDDEEKGYGLRENPKRSFRVADPEFSFPAADDATVVVQDRESETESKNKPTRTRRRSNRTRKSSIINLTNKRTKLMSFMESPASIATEAAEPVSSVSDTSPEENLAMCLIMLSRDKWRKTSVEEEEEMKLKNKKVLRGKHHHHHHHRLQCDKCGKTFRSSGALGSHRSICLCDEADGSERIFQCPYCSKVFGSGQALGGHKRSHLLPSSSSSSPASIINANLRLKQQSFIDLNLPAPPEEDDLSVLSDA* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1626 310 ProSitePatterns Zinc finger C2H2 type domain signature. 245 265 IPR013087 -
Ahy5g1626 310 MobiDBLite consensus disorder prediction 28 123 - -
Ahy5g1626 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 243 265 IPR013087 -
Ahy5g1626 310 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Ahy5g1626 310 SMART c2h2final6 4 26 IPR013087 -
Ahy5g1626 310 SMART c2h2final6 209 229 IPR013087 -
Ahy5g1626 310 SMART c2h2final6 243 265 IPR013087 -
Ahy5g1626 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 209 230 IPR013087 -
Ahy5g1626 310 Gene3D Classic Zinc Finger 207 265 - -
Ahy5g1626 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Ahy5g1626 310 MobiDBLite consensus disorder prediction 65 80 - -
Ahy5g1626 310 Pfam C2H2-type zinc finger 3 28 - -
Ahy5g1626 310 Pfam C2H2-type zinc finger 243 265 - -
Ahy5g1626 310 MobiDBLite consensus disorder prediction 97 112 - -
Ahy5g1626 310 SUPERFAMILY beta-beta-alpha zinc fingers 210 265 IPR036236 -
Ahy5g1626 310 Pfam Zinc finger, C2H2 type 210 229 IPR013087 -
Ahy5g1626 310 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 310 - -
Ahy5g1626 310 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 310 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1626 Ahy-Chr5 42547027 42548795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1626 1 307 C2H2 Transcription Factor Family AT3G60580 34.146 3.64e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy5g1626 zf-C2H2_6 1.80E-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1626 - - aip:107643045 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy5g1626 5 42547027 42548795 Ahy11g1329 11 46910470 46911946 PCT
Ahy5g1626 5 42547027 42548795 Ahy1g1309 1 38825880 38828243 PCT
Ahy11g1329 11 46910470 46911946 Ahy5g1626 5 42547027 42548795 PCT
Ahy1g1309 1 38825880 38828243 Ahy5g1626 5 42547027 42548795 PCT