Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1592 ATGGATGGGCGAGAAGCAATGTCATTCTCTGGCGGCCCTGCCTCATTCTACATACATAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGTTGGTGGTTCTCGAACACCAACACAGCCACAACCCGGAGGCTTCCAAGGACCTCCTGGGTTCCGGGCTGTCTCAAACGTGAGAGGTGCTGGTGGCCCTGGTCCTGCTGCTTCTGCATTCTCACCAGAGCCTCAGCATCCTAATTTTGGTCATGGAATCAGCATAGGTTCCTCCTCCCCTGGTGGTGGTGCTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGTGGTAGTGGTGCACCTCCTCCATCTTCAGGGGAGCCTGTAAAGAAGAAAAGAGGGAGGCCAAGAAAGTATGGTCCTGGTGGACCTGTTTCTTTGAGGCTCTCTGCCACTGCTAATTCATCTCCTGGCTCCGGTACTCCCTTGGAAAAGAAGCGGCGCGGACGCCCCCCTGGAAGTGGAAGGAAGCAACAGCTAGCTTCTCTAGGTGAATGGATGAACAGTTCTGCAGGGATGGCCTTCTCACCTCATGTTATAAGTGTTGAACCTGGGGAGGACATTGTAGCCAAGTTATTGTCATTTGCACAGCAGAGACCAAGGGCTGTATGCATAATGTCTGGTACTGGGATAGTTTCTTCGGTCACTATGCGTCAACCTGCTTCTAATACTGTCAGTGTTACTTATGAGGGACGATTTCAAATTTTATGCTTGTCTGGTTCTTATTTGGTTGCGGACGATGGTGGAGCTCGTAGTAGAACAGGCGGCATCAGTGTTTCCCTTTCTAGTCCTGAGGGTCATGTTATTGGTGGTGGCGTTGCTGTGCTTATTGCCGCAACCCCAGTGCAGGTGGTAGTATGCAGTTTTGTATATGGTGGCAGCTCCAAGGCAAAGCCTAAGCAAGTGACAAGCACAAAAGATAGTGGTTCGGAGCCTCAAAGTAGCGACAAGTTAGCTTCTCTGGCAAGTGCACCTCCTCCTAATCAAAACTACAACTCATCTTCATCTGCGGTAGCCATTTGGCCTGGTTCGCAGCCGGCTGATCTTAAAAGTGCACATCCACACACTGGTATTGACCTGACACGTGGATGA 1125 0.5182 MDGREAMSFSGGPASFYIHRGGGGGGGGGGGGVGGSRTPTQPQPGGFQGPPGFRAVSNVRGAGGPGPAASAFSPEPQHPNFGHGISIGSSSPGGGAGGGGGGGGGGGGSGAPPPSSGEPVKKKRGRPRKYGPGGPVSLRLSATANSSPGSGTPLEKKRRGRPPGSGRKQQLASLGEWMNSSAGMAFSPHVISVEPGEDIVAKLLSFAQQRPRAVCIMSGTGIVSSVTMRQPASNTVSVTYEGRFQILCLSGSYLVADDGGARSRTGGISVSLSSPEGHVIGGGVAVLIAATPVQVVVCSFVYGGSSKAKPKQVTSTKDSGSEPQSSDKLASLASAPPPNQNYNSSSSAVAIWPGSQPADLKSAHPHTGIDLTRG* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1592 374 Pfam Plants and Prokaryotes Conserved (PCC) domain 188 301 IPR005175 -
Ahy5g1592 374 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 374 - -
Ahy5g1592 374 CDD DUF296 188 300 IPR005175 -
Ahy5g1592 374 Gene3D - 188 318 - -
Ahy5g1592 374 ProSiteProfiles PPC domain profile profile. 181 322 IPR005175 -
Ahy5g1592 374 MobiDBLite consensus disorder prediction 305 374 - -
Ahy5g1592 374 MobiDBLite consensus disorder prediction 1 171 - -
Ahy5g1592 374 MobiDBLite consensus disorder prediction 308 352 - -
Ahy5g1592 374 SUPERFAMILY AF0104/ALDC/Ptd012-like 185 302 - -
Ahy5g1592 374 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 374 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1592 Ahy-Chr5 41971091 41974295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1592 1 374 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 48.020 2.07e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1592 - - aip:107643074 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy5g1592 5 41971091 41974295 Ahy13g2853 13 114244378 114247365 PCT
Ahy5g1592 5 41971091 41974295 Ahy3g2519 3 111499056 111501938 PCT