Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1589 ATGGGGAAGGGTAGACCTAGGGCTGTGGAGAAGGGTGTAGTTGGGGCGAGCAACACTGTTACCTGCTGCGAGTCCACCAGTGTACCCTCAGGTCCTGTGTATTACCCTACTGAGGATGAGTTCAAGGATCCCTTAGATTATATTTACAAGATTAGGCCTGAGGCTGAGCCTTATGGGATTTGTAGGATTGTTCCACCTAAGGGTTGGAACCCTCCTTTTGCTTTGGATCTGGATACTTTCACTTTTCCCACCAAGACACAGGCCATTCACAAGCTCCAGGCTCGCCCCGCCGCATCGGACTCCATGACTTTTGACTTGGAGTACTCTAGGTTCTTGCAGGACCAGTGTGGTAAGAAGTCTAGAAAGAGGGTTGTGTTTGAAGGGGAGGACTTGGACTTATGCAAGTTGTTCAATGCGGTTAAGCGCTTTGGCGGGTACGATAAGGTTGTTGATGCCAAGAAGTGGGGGGATGTTGCTAGGTTTTTGAGGCCGGCCGGGAAGATTACGGATTGTGCTAAGCATGTGTTGTGTCAATTGTACCGGGAGCATTTGTATGATTATGAGGAGTTTTATAATAAGATGAATCAAGGGACTGCTGTGAACTGTAAGAAAGGTGAGAGAGATGAGAGGAAGAGTGATCACAGAGTGCAATCCTCGACATCCAAGAAGCATCCCCGGAGGGTTAGTGGTCTGAAAGTTAAGGATTGTAAAGTACATGTAGAAGAAGAACGTGATCAGATTTGTGAGCAGTGCAAGAGTGGTTTGCACGGTGAAGTCATGCTTTTGTGTGATAGGTGCGATAAGGGCTGGCATACTTATTGTCTTTCCCCGCCGTTGAAGCAAATTCCACAGGGAAATTGGTACTGTTTCAGCTGCTTGAATTCTGATAGGGACAGCTTTGGTTTTGTGCCTGGGAAGCATTACACATTGGAAGCCTTTAGGCGTATTGCTGATCGGTCAAGGAGGAGATGGTTTGGATCAGGGCCTGTTTCAAGGGTGCAGATGGAGAAAAAATTTTGGGAGATTGTCGAAGGATCAGTTGGTGAAGTTGAGGTTATGTATGGAAATGACTTGGATACATCTGTATATGGAAGTGGTTTCCCACGCGTTGCTGATCAGAAAATGCAATCCGTTGACGACAAGTTATGGCAAGAATACGCAACAATCCCATGGAATCTCAATAACTTGCCAAAGCTGAAAGGCTCAATGCTTAGATCTATTCAACACAATATCACTGGTGTTATGGTACCCTGGCTATATATTGGGATGTTGTTCTCATCTTTTTGCTGGCACTTCGAGGATCACTGCTTTTACTCAATGAATTATTTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGCAATCAAGCCAGTGCATTTGAGAAGGTGATGAGAAGTAGTCTTCCTGATCTTTTCGATGCACAACCTGATCTACTTTTCCAGCTTGTTACTATGTTAAACCCATCTGTCTTGCAAGAAAATGGGGTTCCTGTCTACAGCGTACTTCAGGAGCCTGGGAATTTTGTTATAACCTTCCCACGATCTTATCATGGAGGTTTCAATCTTGGTTTGAATTGTGCAGAGGCAGTAAATTTTGCTCCAGCTGACTGGCTACCTTTTGGTGCATTTGGTGCTGATCTCTATCAGCGGTATCACAAACCTGCTGTATTGTCGCATGAGGAGCTTCTTTGTGTAGTAGCCCAGCATGGCGATGTTGACAGCAGAGTATCTTCATATTTGAAGAAGGAATTGTTGAGAATATCAGATAAAGAAAAGTCTTGGAGAGAGAAACTATGGAAAGATGGTATAATTAAATATTCTCGCATGACTCCTCGCAAATGTCCACAATATGTGGGAACTGAGGAGGATCCAACATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCTGTTGTGTGCAGTTGCCGACCATCATCTTTTGTGTGCCTGGAGCACTCGGAACACCTTTGTGAGTGTAAGACTGTGAAGCTGCGTCTTCTCTACCGTCATTCACTTGCAGAATTGTTTGACTTGGCCTTTTCCATGGAAGAATTTACTTCTGATGACAAGGCTGAATGTAGAAGTGTTAGAAGGCAATCTTCTTGTCAGGGTGCTTTGACCAAAAAGGTGAAAGGTATCTCCGTTAATTTAAATCAACTTGCTACAGAATGGCTTCTGCAATCTAGTACGATTCTTCAGAATCCATTTCTGAGCAATGCATTTGTTACTACACTAAGGAAAGCTGAACAGTTTCTTTGGGCTGGTTCTGAGATGGACTCTGTTCGAGACATGGTGAAGACCTTGATTGAAGCTCAGAAGTGGGCAGAAGGGATAAGAGATTGCATAACAAAAATTGAGTTTTGGTATCAAGATTCAACTGTAAAGAAAGTTCATTTAGAATTCATTGATGAGTTATTGAGATTTAATCCTCCACCTTGCAATGAGCCTAATTATCATAAATTGAAGGAATACGCTGAAGAAGCGAGGTTATTAGTTCAGGATATTGATACTGCTTTATCGAGGTGTTCAAAGATGTCTGAGTTGGAACTTTTATACTCCAGAGCTTGTGGCTTGCCCATCTACATGAAAGAGAGTAAGAAATTAGAAGGGAGGATTTCTTTGATTAAGACATGGCTGGACAGTGTTAGAAAGTGTATCTCTGCGAGACATCCTACTGTCTTAGAGTTTAACATTCTTTACAAGTTAAAATCAGAGATCTTGGATCTTCAAGTTCATCTTCCAGAGATAGAGGTGTTTGAGAATATGGTAAATCGAGCTGAATCTTGTAGCATCCAATGTCGAGAGATGTTAGAAGGTCCTATGAATCTACAGAATGTTAGTTTGCTGCTTAAGGAATGGGACAATTTTGCAGTTGCTGTACCAGAGTTGCAGCTTCTAAGACAATACCATTCAGATACTGTGTTGTGGGTTGTCCATGTTAATGATCTTTTAAGGAGAGCTCATGTGCAGGGTGATGAACATAATACAGTTAATGAATTGATGCACATTTTTGAAGAAGGTTCATCTTTAAAAATTCAAGTTGATGAGTTGCCATTAGTTGAGATGGAGCTAAAGAAAGCTAGTTGCCGGGAGAATGCTTTGAAGGCTCGTGATTCTAGAATGCCTTTGGAATTCATTCAGCAACTGCTAGAGGAAGCTAAAATGCTGCACATTGAGGAAGAGAAACTATTCGTTAATTTATCTTGTGTTCTTGCTCTTGCCATACCTTGGGAGGAAAGGGCTACAGAGATTCTTTCACATGAGAATCCTATTTCTGACTTTGAGGACATGATCAGGGATTCAGAAAACATATTTGCTATTCTTCCTTCACTTAATGATGTTAAAGACGCATTTTCTGAAGCTAATTTATGGTTAAGGAATTCAAAGCCATATTTAGTCTCTTCTCCGTGTGCTTCAAGTTCTTTGCTGAAAGTTGAGGACTTGCAGATGTTGGTTTCTGAATCGAAGCTTCTTAAAGTATCTTTGGGAGAAAGAAGGATGCTGGAACTAGTTTTGAAGAACTGCAAACTTTGGGAATGTGAAGCATCTTCTCTACTGGATGATTGTCAGTGCCTTTTCGAATTGGATAACTGTGTTGATGGAGTAAGCAGTGATTTAATGTTTAGGGTGGAAGATTTGATTGCAAGAATCCAATCTGCTATAGCATCTGGTGTTTCACTTGGTTTTGACTTCATAGAGATTTCAAAACTTCAAGCATCTTGTTCTACACTACAATGGTGCAAAAGAGCCCTTTGTTTCAGTGATTGTCCGCCATCATTAGAGGATGTTTTGGAGGTTGCGGAAGGTCTTTCTCATTCCTGTGTTTCTGGTGTGCTGTTGAAAGTTCTGGTTGATGGAGTTGAATGGCTTAGGAGAGCGTTGGAGGAAATGTGTCGACCTTGTAATTCTAGAAGATGCCATTTGACTGAGGTTCAAGATACTCTTAATGATTATAAGAATGTTAATATGACCTTTGGAGCAGTATATGGTCAACTTGAAGAAGCCATTAGAAAACATATGTTATGGCAAGAACAAGTGCACCAATTTTTTGGCCTGAATTCTAGGGATCGATCTTGGTCATTGATGTTGCAGCTGAAGGAGCTTGGAGATACTGTTGCTTTCAGTTGCTCAGAGCTGGATATGATTTTATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAAACGATGCTTAGACAAAATAGGATCTTCTGTCCAAACTGACAATTTGCTGTTTAATGTGCTGGAGAAGATAAAACAGACTCTAGATAGATCATTGTTCATATATGGTGATGTTAAAGAAAGGAAGGATCAAAACCTCTGCATTTGCTGTCTTTTGCATTCTGAGTATCAGGAATTTCTTACTTGTTCGACTTGTATGGACTGCTATCATTTGCAGTGCATTGGACTAACAGCAAAGGACACCTGCATTGAAAATTACAAATGCCCTTACTGTGCAATTTTGATTGGTGAATCTTGTTATCCAAGTGGAAGTGGCCTCCTGAGGTTTGGTAAGAAGCATATTGAATTGAAAATTCTCATTGCTCTTCTATCGGAAGCTGAACATTTCTGTTTGAGGATTGATGAAATGGAAGTTCTGAATGAACTTGTTGAGAAAGCCCTTCTGTGCAAATCTTTCTTGAGAGAAATACTGAACTTTGCATCAACTGTTGTTGATGAAGATATAAGCATTGTCTCTGAAAAATTGATGAAAGCCATAAAGGCTAGCGATGTGGCTGGTGTCTATGATGAGCATGATAATTCTGACCTTGAGTTGGCTTTAGCAAAAAACTTGTGGAAAATTCAAGTCAATAGATTGCTAAATGGTGTATGCAAGCCCACAATCCGGCAGATTCAGAAGCATATGAATGAGGGAGTGGATATGGAAATATCAGCTGAAGATCACTATATGCTTAAACTTACAAATGTGAATTGCTTGGGTTTGCAGTGGGCAGAACTAGCAAAAAAGGTGGTAAACGATTCTGGGGCACTAAGCCTAGATAAAGTTTTGGAAGTAATAGTAGAAGGTGAAAACTTGCCTGTTGATGTTGATGAGGAACTCAAGATGTTGAGGTCTCGATGCATGCTTTACTGTATATGTCGAAAGCCTTATGATAAGAAAGGGATGATAGCATGCAAACAATGCAATGAATGGTACCATTTTGATTGCATGAAATTACCATGCACGCAGCAGCTCTACATTTGTCCTGCATGCAACCCCTGTGCAGAAGAACCATTGCCTACAAACCATGAGAGATTAGCTAGTGCTAAATTTGTGGAGCCTAAAACCCCATCTCCGAGGCACACAAACCCAAGAAAGAAACAGAAAAGAGATGTGGGCAATGTCACTTGCAAGATGTTTACAACAGCAACAGTAACAGCAGCAGAAGATAGAGATAGTAGTAGGTGTAGGAAATCAAATGGGATAGAATGTCTTAGGTGGCAAAACCGAAAGCCTTTTAGAAGAGCAGCTAAGAAACGTGTTGAGCTTCGAAGTCTTACTCCAATTCTATACACACAACGATAA 5529 0.412 MGKGRPRAVEKGVVGASNTVTCCESTSVPSGPVYYPTEDEFKDPLDYIYKIRPEAEPYGICRIVPPKGWNPPFALDLDTFTFPTKTQAIHKLQARPAASDSMTFDLEYSRFLQDQCGKKSRKRVVFEGEDLDLCKLFNAVKRFGGYDKVVDAKKWGDVARFLRPAGKITDCAKHVLCQLYREHLYDYEEFYNKMNQGTAVNCKKGERDERKSDHRVQSSTSKKHPRRVSGLKVKDCKVHVEEERDQICEQCKSGLHGEVMLLCDRCDKGWHTYCLSPPLKQIPQGNWYCFSCLNSDRDSFGFVPGKHYTLEAFRRIADRSRRRWFGSGPVSRVQMEKKFWEIVEGSVGEVEVMYGNDLDTSVYGSGFPRVADQKMQSVDDKLWQEYATIPWNLNNLPKLKGSMLRSIQHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGNQASAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSVLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPFGAFGADLYQRYHKPAVLSHEELLCVVAQHGDVDSRVSSYLKKELLRISDKEKSWREKLWKDGIIKYSRMTPRKCPQYVGTEEDPTCIICQQYLYLSAVVCSCRPSSFVCLEHSEHLCECKTVKLRLLYRHSLAELFDLAFSMEEFTSDDKAECRSVRRQSSCQGALTKKVKGISVNLNQLATEWLLQSSTILQNPFLSNAFVTTLRKAEQFLWAGSEMDSVRDMVKTLIEAQKWAEGIRDCITKIEFWYQDSTVKKVHLEFIDELLRFNPPPCNEPNYHKLKEYAEEARLLVQDIDTALSRCSKMSELELLYSRACGLPIYMKESKKLEGRISLIKTWLDSVRKCISARHPTVLEFNILYKLKSEILDLQVHLPEIEVFENMVNRAESCSIQCREMLEGPMNLQNVSLLLKEWDNFAVAVPELQLLRQYHSDTVLWVVHVNDLLRRAHVQGDEHNTVNELMHIFEEGSSLKIQVDELPLVEMELKKASCRENALKARDSRMPLEFIQQLLEEAKMLHIEEEKLFVNLSCVLALAIPWEERATEILSHENPISDFEDMIRDSENIFAILPSLNDVKDAFSEANLWLRNSKPYLVSSPCASSSLLKVEDLQMLVSESKLLKVSLGERRMLELVLKNCKLWECEASSLLDDCQCLFELDNCVDGVSSDLMFRVEDLIARIQSAIASGVSLGFDFIEISKLQASCSTLQWCKRALCFSDCPPSLEDVLEVAEGLSHSCVSGVLLKVLVDGVEWLRRALEEMCRPCNSRRCHLTEVQDTLNDYKNVNMTFGAVYGQLEEAIRKHMLWQEQVHQFFGLNSRDRSWSLMLQLKELGDTVAFSCSELDMILSEVEKVENWKKRCLDKIGSSVQTDNLLFNVLEKIKQTLDRSLFIYGDVKERKDQNLCICCLLHSEYQEFLTCSTCMDCYHLQCIGLTAKDTCIENYKCPYCAILIGESCYPSGSGLLRFGKKHIELKILIALLSEAEHFCLRIDEMEVLNELVEKALLCKSFLREILNFASTVVDEDISIVSEKLMKAIKASDVAGVYDEHDNSDLELALAKNLWKIQVNRLLNGVCKPTIRQIQKHMNEGVDMEISAEDHYMLKLTNVNCLGLQWAELAKKVVNDSGALSLDKVLEVIVEGENLPVDVDEELKMLRSRCMLYCICRKPYDKKGMIACKQCNEWYHFDCMKLPCTQQLYICPACNPCAEEPLPTNHERLASAKFVEPKTPSPRHTNPRKKQKRDVGNVTCKMFTTATVTAAEDRDSSRCRKSNGIECLRWQNRKPFRRAAKKRVELRSLTPILYTQR* 1843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1589 1842 SMART JmjN_1 30 71 IPR003349 -
Ahy5g1589 1842 SUPERFAMILY FYVE/PHD zinc finger 1437 1487 IPR011011 -
Ahy5g1589 1842 PANTHER LYSINE-SPECIFIC DEMETHYLASE 29 864 - -
Ahy5g1589 1842 SMART ARID_2 95 188 - -
Ahy5g1589 1842 ProSitePatterns Zinc finger PHD-type signature. 248 292 IPR019786 -
Ahy5g1589 1842 SUPERFAMILY FYVE/PHD zinc finger 1692 1747 IPR011011 -
Ahy5g1589 1842 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 29 864 - -
Ahy5g1589 1842 MobiDBLite consensus disorder prediction 1758 1779 - -
Ahy5g1589 1842 CDD ARID 104 188 - -
Ahy5g1589 1842 SMART cupin_9 385 551 IPR003347 -
Ahy5g1589 1842 ProSitePatterns Zinc finger PHD-type signature. 1442 1486 IPR019786 -
Ahy5g1589 1842 MobiDBLite consensus disorder prediction 202 227 - -
Ahy5g1589 1842 Pfam jmjN domain 32 65 IPR003349 -
Ahy5g1589 1842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1684 1741 IPR013083 -
Ahy5g1589 1842 Gene3D Cupin 13 134 - -
Ahy5g1589 1842 SUPERFAMILY ARID-like 81 201 IPR036431 GO:0003677
Ahy5g1589 1842 Pfam JmjC domain, hydroxylase 418 534 IPR003347 -
Ahy5g1589 1842 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Ahy5g1589 1842 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Ahy5g1589 1842 Pfam PHD-finger 247 294 IPR019787 -
Ahy5g1589 1842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1423 1490 IPR013083 -
Ahy5g1589 1842 SMART PHD_3 1698 1740 IPR001965 -
Ahy5g1589 1842 SMART PHD_3 247 293 IPR001965 -
Ahy5g1589 1842 SMART PHD_3 1441 1487 IPR001965 -
Ahy5g1589 1842 SUPERFAMILY FYVE/PHD zinc finger 238 295 IPR011011 -
Ahy5g1589 1842 ProSiteProfiles Zinc finger PHD-type profile. 245 295 IPR019787 -
Ahy5g1589 1842 SMART bright_3 99 193 IPR001606 GO:0003677
Ahy5g1589 1842 Pfam ARID/BRIGHT DNA binding domain 121 188 IPR001606 GO:0003677
Ahy5g1589 1842 Pfam C5HC2 zinc finger 628 677 IPR004198 -
Ahy5g1589 1842 ProSitePatterns Zinc finger PHD-type signature. 1699 1739 IPR019786 -
Ahy5g1589 1842 CDD PHD_RSF1 248 292 - -
Ahy5g1589 1842 Pfam PLU-1-like protein 1142 1397 IPR013637 -
Ahy5g1589 1842 Pfam PLU-1-like protein 944 1187 IPR013637 -
Ahy5g1589 1842 ProSiteProfiles JmjC domain profile. 385 551 IPR003347 -
Ahy5g1589 1842 Gene3D Cupin 237 556 - -
Ahy5g1589 1842 SUPERFAMILY Clavaminate synthase-like 377 571 - -
Ahy5g1589 1842 MobiDBLite consensus disorder prediction 202 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1589 Ahy-Chr5 41943263 41957072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1589 40 95 JUMONJI Transcription Factor Family AT4G20400 51.667 7.11e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ahy5g1589 PLU-1 1.10E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1589 K11446 - gmx:100789512 2930.2