Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1579 ATGGGATTTCCGGTGGGATACACAGAGCTTCTCTTACCCAAGCTCTTCCTCCAAATACTCTCCCTCCTCTCTTTCCTCAGAAAACTCATCTCCGCTCTCTTCCACTACCTCGGCCTCCAACACTTCTTGGAACCCGACACCATCAACCACCACCCTCTCCACCCCCAATTCCAGTCCGTCTCCGCACTCCTCATCAGGGAAATCCTGCCGGTGGTCAGGTTTCAGGAGGTGGCGGACCCGGCGGAGGAGAGCTGCGCGGTGTGCTTGTATGAGTTCCAAGGGGACGACGAGATCCGACGCCTCAGAAACTGCCGGCACATATTCCACCGGAGATGCCTTGACCGTTGGATGGGGTACGAACAGAGGACGTGCCCGTTGTGCCGGACGCCGCTCATACCGTACGATATGCAAGCTTGCTTCAATCAGAGCCTCTGGGATGCTTCTGCCATCCCTGAATTCTCCTAG 465 0.5677 MGFPVGYTELLLPKLFLQILSLLSFLRKLISALFHYLGLQHFLEPDTINHHPLHPQFQSVSALLIREILPVVRFQEVADPAEESCAVCLYEFQGDDEIRRLRNCRHIFHRRCLDRWMGYEQRTCPLCRTPLIPYDMQACFNQSLWDASAIPEFS* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1579 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 134 IPR013083 -
Ahy5g1579 154 SMART ring_2 85 127 IPR001841 -
Ahy5g1579 154 ProSiteProfiles Zinc finger RING-type profile. 85 128 IPR001841 -
Ahy5g1579 154 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 152 - -
Ahy5g1579 154 PANTHER BRH1 RING FINGER PROTEIN 1 152 - -
Ahy5g1579 154 SUPERFAMILY RING/U-box 69 134 - -
Ahy5g1579 154 Pfam Ring finger domain 84 128 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1579 Ahy-Chr5 41770281 41771201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1579 1 149 C3H Transcription Factor Family AT1G63840 57.143 9.45e-58 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1579 K16281 - fve:101313016 209.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy5g1579 5 41770281 41771201 Ahy13g2808 13 110998495 110999331 PCT
Ahy5g1579 5 41770281 41771201 Ahy3g2484 3 108493848 108494663 PCT