Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1549 ATGCCTGCGCCTCCTCCTAACTACACTCACCACCGCACCAAACTCGTCAGGATAACAGTTACTGACGCTGATGCCACCGACTCCTCCAGCGACGAAGCACAACTCTCATCCTCCACGCGCCACCACCGACACAGAAAGCTCGTCAACGAGATTCTTATCGAGCCCTGTCAAGTGCCTCCCCGGAAGAGACCCAAGAAGTCATCAGCAAGTACCTCCGCCGCCAAGCCCAGAGCTCCGGCCATTCGCCGCCAACTCTCCGGCAGGAAGTTCCGCGGGGTGAGGCAGAGGCCATGGGGGAAATGGGCCGCGGAGATAAGAGACCCTTCACGGCGCGTGAGGTTATGGTTAGGTACCTACGACACCGCGGAGGAAGCTGCCATGGTGTACGACAACGCGGCCATTAAACTGCGTGGACCCGACGCGCTCACCAATTTCATAACGCCGCCACCAACCACAACGCTGGACAGTAATAATAATAATGAAAATAAAACGGCAGCACCAACGGTTTTGGTAAACGGTTACAGTTCCGGTGATGAGGAGTCTCAAAGCACCAACAACAATCATAGTCAGAGTCACAATCTGTTCTCTCCAACTTCGGTGCTTCATCATCATCATCATCATCATCATCATCATCATCATAATCAGTGTTGTTATTCCTTATCGGAGGAAGGTGAATCCACCGTAACGGGAAAAGAGGATGAATATTCGAGCGTGTCGGAGAATAATAAGGTCAAATCTGAGGAAGACGATTCATCATTCCTTCACATTCCGAGTGATGTGCTCTTTGAATTTCAAGTCTCTTCTTCGCCGTTGGTGGTGCCAGATGTTTTTGAAGAAAGCTTGCTCTTCGCCGATGATTGCGGCGGTTTCCTCACTTCTTGTGAGGACTTTGATTTCAGCTTCAAAAGCTGGCACAGAGAGGATGACTTCTTCCAAGATATAACTGATTTATTCCCTTCAGATCCGCTTCTTGCTCTTTGA 981 0.5036 MPAPPPNYTHHRTKLVRITVTDADATDSSSDEAQLSSSTRHHRHRKLVNEILIEPCQVPPRKRPKKSSASTSAAKPRAPAIRRQLSGRKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFITPPPTTTLDSNNNNENKTAAPTVLVNGYSSGDEESQSTNNNHSQSHNLFSPTSVLHHHHHHHHHHHHNQCCYSLSEEGESTVTGKEDEYSSVSENNKVKSEEDDSSFLHIPSDVLFEFQVSSSPLVVPDVFEESLLFADDCGGFLTSCEDFDFSFKSWHREDDFFQDITDLFPSDPLLAL* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1549 326 ProSiteProfiles AP2/ERF domain profile. 89 146 IPR001471 GO:0003700|GO:0006355
Ahy5g1549 326 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 322 - -
Ahy5g1549 326 Pfam AP2 domain 89 138 IPR001471 GO:0003700|GO:0006355
Ahy5g1549 326 MobiDBLite consensus disorder prediction 171 195 - -
Ahy5g1549 326 CDD AP2 89 145 IPR001471 GO:0003700|GO:0006355
Ahy5g1549 326 SMART rav1_2 89 152 IPR001471 GO:0003700|GO:0006355
Ahy5g1549 326 Gene3D AP2/ERF domain 88 147 IPR036955 GO:0003700|GO:0006355
Ahy5g1549 326 MobiDBLite consensus disorder prediction 20 85 - -
Ahy5g1549 326 SUPERFAMILY DNA-binding domain 89 145 IPR016177 GO:0003677
Ahy5g1549 326 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Ahy5g1549 326 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Ahy5g1549 326 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 12 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1549 Ahy-Chr5 41181472 41183396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1549 11 326 AP2-EREBP Transcription Factor Family AT4G23750 41.867 4.08e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy5g1549 AP2 2.40E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1549 - - ahf:112801434 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy5g1549 5 41181472 41183396 Ahy13g2746 13 104655575 104658501 PCT
Ahy5g1549 5 41181472 41183396 Ahy3g2418 3 101875273 101876937 PCT