Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1521 ATGATCATTGGTCCAATGGCTAACTTGCTAATAACTTTGTTCTTAATTTCCATTTTTGAATTCTTGTTTCTTGCTAACGCAACAAGAAGCAAAACCACTTCACCAGCTTGTGGAAGCAGATATTGTGGAAGCTCTGAAGTAGCTATTGAGTTCCCTTTCCATTTGACACAGGATCATACTAGCTTTGTTGAAGGAGATGCACGATGCGGGTACCAAGGTTTTGAAGTTTCGTGTAACCAAAGGAATTTGATGATTAGTCTCCCAAATGGAGGAGGAGAATTCATCGTCAAAAACATCTCTCTAGAGCACCAATATATTTGGGTAAACGACCCTAATGAGTGTTTTGCTAAACGGTTCTTGCAGGGCAAGGATCTCATCAAAGATTCACCCTTCCTATGGGGCCTTCCAAATTCAAAGAGAGTGATGTTTTACAATTGCAGCGAATTAGCAGGAATTGATGTTGATCCACAACTACGTCTTCCTTGCCTGAGTGACGATGAGAAGCATTATTATTCTGTTATAGTTTTGTCAGAGTCAGATATTGAGAATGAGAATTATTATAGTTCAAGGTGTAGGAATATTGGGTCTGCTTTGTTTCCCGTTAAGGATGTTTCAGAAGATGATTCTTCAATATCATCACGGCAAATAAGAGATGAACTTGTTCATTTTGATATGAAGTTGCAATGGTTTAGGCCTAGTTGTTATTGTAAGGAGGATCAACACTGTGGCTTCATACCAAATACTGATTTTGACGTTGTTTGTTACAACCACAAAAATCAAGAACAAGATATGTTACTTGAACTTGACAGCGGTTATTCCAATAATAATGGTAATGGGCACATGCAAGCACTTTCCGGTACTAGTGGAAGTCCTCCAAGTTATTATTATGGTGAAAAGGAAGAGAGCAAGTTTGCTATAGGATTGGGAACGCTAGGTATATTAATATTATTATTTTATGTAGCATTTCATATAACTAAGGAGATGAGAGAAGAAAGGTTACGACAGAGAATCATGGAGACCCAACATGCGCGAGCAAGGAGAATGTTGTTAAGCCAACAGCGACAGCTAGGAGAGCTACGCAGATTAAGAATGATGGAATCATCATCAATAATCAGTGAGAGGTACCCTGCCACCAGCGATGAGAATTCAACAATAATAATAGAGTTAGAACAATGTCCAGTTATCCAGCTAGGTGACAGTGGACAATTGCCAACAATGTTAATGGACAACGTTTGCTCTATATGTCTTAGTGAGTACGAGGCTAAAGAAACATTACGGAGCATGCCACAGTGTAATCACTTTTTTCATTCTCATTGTATTGATGCCTGGCTCAAGATGAATGCTACTTGTCCCTTGTGCCGAAAATTGCCAATATGA 1377 0.3893 MIIGPMANLLITLFLISIFEFLFLANATRSKTTSPACGSRYCGSSEVAIEFPFHLTQDHTSFVEGDARCGYQGFEVSCNQRNLMISLPNGGGEFIVKNISLEHQYIWVNDPNECFAKRFLQGKDLIKDSPFLWGLPNSKRVMFYNCSELAGIDVDPQLRLPCLSDDEKHYYSVIVLSESDIENENYYSSRCRNIGSALFPVKDVSEDDSSISSRQIRDELVHFDMKLQWFRPSCYCKEDQHCGFIPNTDFDVVCYNHKNQEQDMLLELDSGYSNNNGNGHMQALSGTSGSPPSYYYGEKEESKFAIGLGTLGILILLFYVAFHITKEMREERLRQRIMETQHARARRMLLSQQRQLGELRRLRMMESSSIISERYPATSDENSTIIIELEQCPVIQLGDSGQLPTMLMDNVCSICLSEYEAKETLRSMPQCNHFFHSHCIDAWLKMNATCPLCRKLPI* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1521 458 SUPERFAMILY RING/U-box 406 455 - -
Ahy5g1521 458 CDD RING-H2_PA-TM-RING 411 454 - -
Ahy5g1521 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 375 457 IPR013083 -
Ahy5g1521 458 Pfam Wall-associated receptor kinase galacturonan-binding 37 110 IPR025287 GO:0030247
Ahy5g1521 458 SMART ring_2 412 453 IPR001841 -
Ahy5g1521 458 ProSiteProfiles Zinc finger RING-type profile. 412 454 IPR001841 -
Ahy5g1521 458 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 13 455 - -
Ahy5g1521 458 Pfam Ring finger domain 411 454 IPR001841 -
Ahy5g1521 458 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1521 Ahy-Chr5 40360798 40363042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1521 37 457 C3H Transcription Factor Family AT2G25410 28.235 1.32e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1521 - - adu:107488346 886.715