Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1332 ATGGCTTCAAATTCAAGCTCGAAGAAAAACAAAGGTCGCCACAAGATCGAGATGAAGAAGATGATGAAGGAGAGCAACTTGCAAGTGACATTCTCAAAGCGTCGCGGTGGGCTTTTCAAGAAAGCGAGCGAGCTAAGCACCCTTTGCGGTGTTGAGTTGGCACTCATCGTGTTCTCGCCGGGGAACAAGGCCTATTCTTTTGGGCACCCCAGCGTGGAAGCCCTCATCAAAAGCTTCACGGAAGGTGGGGGCCCGCCACACCTGGACGCTGCCACCGTCCACTTCACGACGGAGGCTCATGATGAGCTCAACACATTGCTGGCGAAGATCAACGAGGAGATCGAAGCGGAGAGGAAGCAGTTGCAGGAGATGAACCGCTGGCGGAAGGAGGCAGAGGCTAAGTGGTGGTGGGCTGCTCCTGTTGGTGAGATGAGTGTGCCCAAACTGAAGCAATATAAGGTGGCGCTGGAGAAGCTGAAGAAGACCGTTACTTGCCACTTCGAGAAGCTTCGTATTAATAAAGACCCTGTGACTGTGGGGAATTATACTCCTAATAACATGATGCGGCTGCCTGTGCATGTGCCGATGCAAGTGTCGTTGCCGATATTTTTCTCGTCACTGTTTCAAAACTCTCAAATGCATAATCATCATCAAGCATTTCAAGATGAGATCCCGTACCACCAATTTTATAGCTACACTGCCATGTTGCAACAGGGAGGAGGATCCTCCTTTGAACCATACACTCGTCATAACTAA 756 0.5026 MASNSSSKKNKGRHKIEMKKMMKESNLQVTFSKRRGGLFKKASELSTLCGVELALIVFSPGNKAYSFGHPSVEALIKSFTEGGGPPHLDAATVHFTTEAHDELNTLLAKINEEIEAERKQLQEMNRWRKEAEAKWWWAAPVGEMSVPKLKQYKVALEKLKKTVTCHFEKLRINKDPVTVGNYTPNNMMRLPVHVPMQVSLPIFFSSLFQNSQMHNHHQAFQDEIPYHQFYSYTAMLQQGGGSSFEPYTRHN* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1332 251 Coils Coil 100 134 - -
Ahy5g1332 251 Gene3D - 87 176 - -
Ahy5g1332 251 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Ahy5g1332 251 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Ahy5g1332 251 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Ahy5g1332 251 Gene3D - 24 84 IPR036879 GO:0003677|GO:0046983
Ahy5g1332 251 CDD MADS_MEF2_like 12 79 IPR033896 GO:0000977|GO:0045944
Ahy5g1332 251 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 10 178 - -
Ahy5g1332 251 PANTHER MADS BOX PROTEIN 10 178 - -
Ahy5g1332 251 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Ahy5g1332 251 SUPERFAMILY SRF-like 12 90 IPR036879 GO:0003677|GO:0046983
Ahy5g1332 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 67 IPR002100 GO:0003677|GO:0046983
Ahy5g1332 251 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1332 Ahy-Chr5 36069133 36070060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1332 8 165 Type I MADS-box Gene Family AT5G60440 48.466 4.43e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy5g1332 SRF-TF 3.00E-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1332 - - adu:107488602 465.692