LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy5g1326	ATGCTCTATCAGTCTAACTTACTTTTTGGTCTTTTGGCTGAAAAGGTGATCATGGACAAGGACAAGGACACACCTTTAGTTATGTATATGTTTGTCATTTGTATGTTATTGTTATGTGTTGGAAGCAGCACAGACCCTATTGACACATATTGTCCAACTGAATTCCCATTATATAGCAGCAACAGCACATTTGACAATAACCTGAAGCTTCTTTTGGGGTTGCTGCCCTCCAACACGGCTTCCAAGAATGGCTTCTACAACACATCCGTGGGAGATGGGCAAGACAAGGTGTACGGACAAGCACTGTGCAGAGGAGACATCACCAACTCCACAGTCTGCAAGGAATGCATTCAGAAAGCAAGCCAAGATTTAACAAAGATGTGCAACAGTGAAGATGCAATCATATGGTATGAGCTTTGCCAAGTCCGCTACTCCTTTCAGATGTTCTTCACGAGTATGACTTACACCGGGAAGTATCCTAACCATAATCTTAAGGAGAAGAATATCTCGCACACTTCTGGATTTGACCAAGTCTTGGCATATCTGATGAACAATCTCTCACAAGAAGCAGCTTTTATTCCTGCCAACAACATGTTTGCAGCAGGGGAGATTCAATATTCTGGTTCTGATGGTATCAAGAACAAGAAGCTTTATGGACTAGTCCAGTGTACCAGGGATATCTCTGAAGGAGACTGTGCCACTTGCTTGAGTTCTGCCTTAACAGAACTTACTCAATGCTGCTCCTTCCGAGAAGGCGGTATCATTCTTAGTCGGACTTGCAATGTGAGGTTTGAATCATACAGGTTCTTCAACCAGTCATCAGCAAAGATGCTGCTCTTTCCAACTTCCAAAGGAGGGGGGAAATGGAAGCCATGGATGTTTGCATTGACAATTGTTGGTTCACTCTTAGTATTAGCAGTTACTATTTTGCTGTGCACTGCTTGTCTGCTCCGCAAAGGGGACACAGGGAGAGATGAAGAAAGGATCGAAAGGACGCTGCTACAACAGTTGGCAACCTCCAAGAGCGTAGCAGTTACACAGGAAGGTGACCTGATTAGCTCTGATGAACTGTTGTTCATGAACTTAGCAACCATTAAGGATGCCACTGATGACTTCTCTGATACAAATAAACTGGGACAAGGAGGATTTGGTGCAGTGTACAAGGGTGTTCTACCAGATGGCAGTGAAGTTGCGGTTAAAAGGCTTTCAAAAAAGTCTTGGCAAGGGATAGAGGAATTGAAAAATGAGGTCATACTCATTGCCAAGCTTCAGCATAAGAATCTAGTGAGGCTGTTGGGGTGTGGCTTAGAGGGGGATGAAAAATTTCTCATATATGAATTCATGTCAAACAAAAGCCTTGATCAATTTATCTTTGATCCAGAGAAACGTTCCGAGTTTGATTGGCATACTTGGTATGGGATTATCAATGGCATTGCGAGAGGACTGCTTTATCTTCATGAGGAGTCTCGGCTTAAAATCATTCACAGGGATTTAAAGCCAAACAATGTGTTGTTGGATCATGAAATGGTTGCCAAAATATCAGATTTTGGTATGGCTAGGATATTTTTCGAGAATCAAAATACAGCAAACACAAAGAGAGTTGTGGGAACATATGGATATATGGCTCCCGAATATGCAATGGAAGGACTCTTCTCAGTAAAATCGGATGTGTTCAGCTTTGGTGTCATGCTGCTTGAAATAATCAACGGGAAAAGAAACAGTGGGTTCTACACAACAGAACTTGCCCCAACACTACTGGCATATGCATGGCAGCTGTGGAATGAAGAGAGGAAGTTGGAATTTGTGGATCCAGTGTTGTTGGAATCGTGTATGGCCTGTGAAGTTGTGAAGTGCATGCACATTGGGCTTCTGTGTGTGCAGGAAGATCCGGAGCTGAGGCCTAACATGTCAAGCGTGGTGGTTCTCCTAGGAAGTGAACAAATGGCTCTTCCAAAACCAAGTCAACCAGTATTTTCATTGGGTAGGGCGTTTCATGTTGATCAAGATCCAGGTCCAGCCACTACAACCAATCCTTCTATGAATGGGGGGAGTACATTGTCCAGTGTCTTACCTAGATGA	2079	0.4329	MLYQSNLLFGLLAEKVIMDKDKDTPLVMYMFVICMLLLCVGSSTDPIDTYCPTEFPLYSSNSTFDNNLKLLLGLLPSNTASKNGFYNTSVGDGQDKVYGQALCRGDITNSTVCKECIQKASQDLTKMCNSEDAIIWYELCQVRYSFQMFFTSMTYTGKYPNHNLKEKNISHTSGFDQVLAYLMNNLSQEAAFIPANNMFAAGEIQYSGSDGIKNKKLYGLVQCTRDISEGDCATCLSSALTELTQCCSFREGGIILSRTCNVRFESYRFFNQSSAKMLLFPTSKGGGKWKPWMFALTIVGSLLVLAVTILLCTACLLRKGDTGRDEERIERTLLQQLATSKSVAVTQEGDLISSDELLFMNLATIKDATDDFSDTNKLGQGGFGAVYKGVLPDGSEVAVKRLSKKSWQGIEELKNEVILIAKLQHKNLVRLLGCGLEGDEKFLIYEFMSNKSLDQFIFDPEKRSEFDWHTWYGIINGIARGLLYLHEESRLKIIHRDLKPNNVLLDHEMVAKISDFGMARIFFENQNTANTKRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVMLLEIINGKRNSGFYTTELAPTLLAYAWQLWNEERKLEFVDPVLLESCMACEVVKCMHIGLLCVQEDPELRPNMSSVVVLLGSEQMALPKPSQPVFSLGRAFHVDQDPGPATTTNPSMNGGSTLSSVLPR*	693

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy5g1326	692	Pfam	Salt stress response/antifungal	167	267	IPR002902	-
	Ahy5g1326	692	Pfam	Salt stress response/antifungal	57	146	IPR002902	-
	Ahy5g1326	692	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	493	505	IPR008271	GO:0004672\|GO:0006468
	Ahy5g1326	692	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	29	671	-	-
	Ahy5g1326	692	ProSiteProfiles	Gnk2-homologous domain profile.	157	269	IPR002902	-
	Ahy5g1326	692	ProSiteProfiles	Gnk2-homologous domain profile.	45	149	IPR002902	-
	Ahy5g1326	692	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	29	671	-	-
	Ahy5g1326	692	Gene3D	Transferase(Phosphotransferase) domain 1	448	652	-	-
	Ahy5g1326	692	ProSiteProfiles	Protein kinase domain profile.	372	658	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy5g1326	692	SMART	serkin_6	372	643	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy5g1326	692	MobiDBLite	consensus disorder prediction	668	692	-	-
	Ahy5g1326	692	Gene3D	Phosphorylase Kinase; domain 1	334	447	-	-
	Ahy5g1326	692	CDD	STKc_IRAK	378	640	-	-
	Ahy5g1326	692	Pfam	Protein tyrosine and serine/threonine kinase	375	641	IPR001245	GO:0004672\|GO:0006468
	Ahy5g1326	692	Gene3D	-	157	269	IPR038408	-
	Ahy5g1326	692	Gene3D	-	45	149	IPR038408	-
	Ahy5g1326	692	ProSitePatterns	Protein kinases ATP-binding region signature.	378	400	IPR017441	GO:0005524
	Ahy5g1326	692	MobiDBLite	consensus disorder prediction	670	692	-	-
	Ahy5g1326	692	SUPERFAMILY	Protein kinase-like (PK-like)	354	642	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy5g1326	Ahy-Chr5	36019875	36022913	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy5g1326	47	660	Receptor kinase-like Gene Family	AT4G23230	41.706	1.11e-162	480

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Ahy5g1326		PK_Tyr_Ser-Thr	2.40E-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy5g1326	-		-	adu:107488598	1393.25