Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1321 ATGGCTTCAAATTCAAGCTCGAAGAAAAACAAAGGTCGCCAAAAGATCGAGATGAAGAAGATGATGAAGGAGAGCAACTTGCAAGTGACATTCTCAAAGCGTCGCGGTGGGCTTTTCAAGAAAGCGAGCGAGCTAAGCACCCTTTGCGGTGTTGAGTTGGCACTCATCGTGTTCTCGCCGGGGAACAAGGCCTATTCTTTTGGGCACCCCAGCGTGGAAGCCCTCATCAAAAGCTTCACGGAAGGTGGGGGACCGCCACACCTGGACGCCGCCACCGTCCACTTCACGACGGAGGCTCATGATGAGCTCAACACATTGCTGGCGAAGATCAACGAGGAGATCGAAGCGGAGAGGAAGCAGGTGCAGGAGATGAACCGCTGGCGGAAGGAGGCAGAGGCTAAGTGGTGGTGGGCTGCTCCTGTTGGTGAGATGAGTGTGCCCAAACTGAAGCAATATAAGGTGGCGCTGGAGGAGCTGAAGAAGACCGTTACTTGCCACTTCGAGAAGCTTCGTATTAATAAAGACCCTGTGGCTGTGGGGAATTATACTCTTAATAACATGATGCCGCTGCCTGTGCCTGTGCCGATGCCGGTGCCGTTGCCGCCAATATTTTTTTCGTCGCTGTTTCAAAACTCTCAAATGCATAATCATCATCAAGCATTTGAAGATGAGATCCCGTACCACCAATTTTATAGCTACACTGCCATGTTACAGCAGGGAGGAGGATCGTTCCTCTTTGGACCATACACTCGTAACAACTAA 762 0.5105 MASNSSSKKNKGRQKIEMKKMMKESNLQVTFSKRRGGLFKKASELSTLCGVELALIVFSPGNKAYSFGHPSVEALIKSFTEGGGPPHLDAATVHFTTEAHDELNTLLAKINEEIEAERKQVQEMNRWRKEAEAKWWWAAPVGEMSVPKLKQYKVALEELKKTVTCHFEKLRINKDPVAVGNYTLNNMMPLPVPVPMPVPLPPIFFSSLFQNSQMHNHHQAFEDEIPYHQFYSYTAMLQQGGGSFLFGPYTRNN* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1321 253 Coils Coil 100 134 - -
Ahy5g1321 253 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Ahy5g1321 253 CDD MADS_MEF2_like 12 79 IPR033896 GO:0000977|GO:0045944
Ahy5g1321 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 67 IPR002100 GO:0003677|GO:0046983
Ahy5g1321 253 Gene3D - 24 84 IPR036879 GO:0003677|GO:0046983
Ahy5g1321 253 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 10 178 - -
Ahy5g1321 253 SUPERFAMILY SRF-like 12 90 IPR036879 GO:0003677|GO:0046983
Ahy5g1321 253 PANTHER MADS BOX PROTEIN 10 178 - -
Ahy5g1321 253 Gene3D - 87 178 - -
Ahy5g1321 253 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Ahy5g1321 253 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Ahy5g1321 253 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Ahy5g1321 253 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1321 Ahy-Chr5 35857849 35858849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1321 8 165 Type I MADS-box Gene Family AT5G60440 49.080 1.08e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy5g1321 SRF-TF 3.00E-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1321 - - adu:107488602 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy5g1321 5 35857849 35858849 Ahy19g3360 19 156506151 156506942 PCT
Ahy5g1321 5 35857849 35858849 Ahy9g2272 9 111686020 111686594 PCT
Ahy19g3360 19 156506151 156506942 Ahy5g1321 5 35857849 35858849 PCT
Ahy9g2272 9 111686020 111686594 Ahy5g1321 5 35857849 35858849 PCT