Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1310 ATGGTATGTTATGTTATGTATATGGACCTTGATGCTGAAGTAATAACATTGTCATCGAAGACTCTGATGATGACGAACAGATTTTTATGTGAGATCTGTAGGAAAGGATTTCAGAGGAACCATAATCTGCAGCTACATAAAAGAGGCCACATCTTGTCGTGGAAGCTGAAGCAGAGAACGAAGATGGAGGTGGTGAGGAAGAAGGTATACGTGTGCTCGGAGCCAACTTGCGTGCACCACGATCCTGCCAGAGCACTAGGAGACCTCACCAAAATCAAGAAGCACTTTAACCAGAATCACGGCGAGAAGAAGTGGAAATGCGACAAGTTCTCTAAGAAGTACACAGTTCAATCCGACTGGAAAGCTCACTCCAAAAGCTGCGGCACCCTCTTCGCGGATCTACTGGCGTCGACGTCGAGCTAG 423 0.4657 MVCYVMYMDLDAEVITLSSKTLMMTNRFLCEICRKGFQRNHNLQLHKRGHILSWKLKQRTKMEVVRKKVYVCSEPTCVHHDPARALGDLTKIKKHFNQNHGEKKWKCDKFSKKYTVQSDWKAHSKSCGTLFADLLASTSS* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1310 140 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Ahy5g1310 140 SUPERFAMILY beta-beta-alpha zinc fingers 27 125 IPR036236 -
Ahy5g1310 140 Gene3D Classic Zinc Finger 25 50 - -
Ahy5g1310 140 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 9 129 - -
Ahy5g1310 140 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 129 - -
Ahy5g1310 140 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 50 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1310 Ahy-Chr5 35521002 35521424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1310 9 129 IDZ Gene Family AT1G55110 75.207 5.79e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy5g1310 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1310 K25870 - adu:107488607 296.589