Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1262 ATGATGAAGAACACCATGGCTTCTCTTACTCATCAACTCCCTCTTCTGCTTACCTTTGTGGCATCATATGCATTTGTTCTTACCACAACTAGTGTGTTCTCATCGAAAGTTTCAATGAAAGAAACAATTTTGGAACCTTTCAAGTGCTCCACAAACATAAAAACATGCAATGCCTCACTCTACCACATAACCTACGGGGATAATGATGATGACCAAACCATACAACATTACATATCTTCCAACTACACAAACTCCTCCCAAATCAGACCAATCACACGTGGCACAAGACAAGACCACCTCATAACAGTGCCTTGTTCTTGCAGAAACAACAACAACCTCACCGGTTATTACTATGACACAACCTACACTGTGAAGCCAAATGATAATTTCTATGACATTAATAACTTTGTTTACAGTGGTCAAGCGATGCTTATAAATGGTGTTTTGTACCCGGGTCAGAATCTGAGTATTCATATTCCTTGTGGGTGTTCAGAAATTGAGTCACAAATTGTTGTGACTTACACGGTTCAAAGAAATGATACCTCATCTGGAATAGCTAAGCTTTTGAATTCTACGGTTGCTGAGATGGAGAGTGTGAATCATCTTTTGGATCAGAACCCATCATACATAGATGTGGGTTGGGTTTTGTTTGTTCCTAGCCATTTTAATGGAATTCCACTGCCTCCAACAAAAGAAAAGAAACCAAAGTGGCAGATAATCACTGGGGTCTTAGTGAGTGTGACATTACTGTCAATGATTGCGGTCATCTTTCTCATTCTCAGGAGAAATAGGGATAACGCAGCATCCGCCACAAATAATCCAAAAAGTGTCACTAAAAGATCGATTTCCAAAAAGAACTCTGACATTCATAAAGAATACATGCAAGATGCTACATCATTTGAGTCAGAAAGACCAGTAATTTACTCAATTGAGGAGATAGAAGATGCCACAAATAACTTCGATGAAAACAGAAGAATTGGGGTTGGTGGATATGGCAGTGTATATTTTGGAATGTTAGGCCACAAGGAGGTTGCTGTGAAGAAGATGAAGTCCAATAAATCCAAGGAGTTCTTCGCAGAACTCAAGGCCTTATGTAAGATCCATCACATAAACATTGTGGAGTTGTTAGGGTATGCAAGTGGAGATGACCACCTTTATTTGGTGTATGAGTATGTTGCAAATGGATCTCTGAGTGATCATCTTCATGATCCTTTACTTAAAGGTCATCAGGCTCTATCTTGGTGTGCTAGGACTCAGATTGCATTGGATGCAGCAAAAGGAATTGAATACATACATGATTACACAAAAGCACAATATGTTCACCGTGATATAAAGACTACTAACATTCTTCTTGATCAGAAACTCAGAGCCAAGGTAGCAGATTTTGGCCTCGCAAAACTGGTGGAACGGACCAATGATGAAGAATTCATTGCAACAAGGCTTGTTGGAACACCAGGCTACCTTCCACCCGAATCTGTGAAAGAATTACAAGTAACCATAAAAACGGATGTGTTTGCATTTGGAGTAGTTCTATCAGAGCTGATAACAGGAAAACGTGCGCTATTTCGTGACAGCCAAAAACCCAATCAAATGGAATCTCTTATTTCACTTGTTAAGAAAATATTCCAAGATAATGATCCCGTCACTGCTTTAGAAAATGTTACAGATATGAATCTTCAACATAACTATCCTATAGACGCTATCTACAAGATGGGAGAAATAGCAGAGTGGTGCATGAGGGAGGAACCAATGGAGAGGCCTGAAATGAAGGAGATAGTTGGCGCGTTGTCAAAGATAGTTATGACATCCATCGAGTGGGAAGCATCGCTCGGAGGAGATAGCCAAGTTTTCAGCGGCGTATTTATTGGAAGATGA 1875 0.3989 MMKNTMASLTHQLPLLLTFVASYAFVLTTTSVFSSKVSMKETILEPFKCSTNIKTCNASLYHITYGDNDDDQTIQHYISSNYTNSSQIRPITRGTRQDHLITVPCSCRNNNNLTGYYYDTTYTVKPNDNFYDINNFVYSGQAMLINGVLYPGQNLSIHIPCGCSEIESQIVVTYTVQRNDTSSGIAKLLNSTVAEMESVNHLLDQNPSYIDVGWVLFVPSHFNGIPLPPTKEKKPKWQIITGVLVSVTLLSMIAVIFLILRRNRDNAASATNNPKSVTKRSISKKNSDIHKEYMQDATSFESERPVIYSIEEIEDATNNFDENRRIGVGGYGSVYFGMLGHKEVAVKKMKSNKSKEFFAELKALCKIHHINIVELLGYASGDDHLYLVYEYVANGSLSDHLHDPLLKGHQALSWCARTQIALDAAKGIEYIHDYTKAQYVHRDIKTTNILLDQKLRAKVADFGLAKLVERTNDEEFIATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVLSELITGKRALFRDSQKPNQMESLISLVKKIFQDNDPVTALENVTDMNLQHNYPIDAIYKMGEIAEWCMREEPMERPEMKEIVGALSKIVMTSIEWEASLGGDSQVFSGVFIGR* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1262 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Ahy5g1262 624 ProSiteProfiles Protein kinase domain profile. 320 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy5g1262 624 CDD LysM 172 218 IPR018392 -
Ahy5g1262 624 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Ahy5g1262 624 Pfam Protein kinase domain 321 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy5g1262 624 Gene3D Phosphorylase Kinase; domain 1 297 391 - -
Ahy5g1262 624 Pfam LysM domain 174 219 IPR018392 -
Ahy5g1262 624 Gene3D Transferase(Phosphotransferase) domain 1 392 609 - -
Ahy5g1262 624 SMART serkin_6 320 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy5g1262 624 PIRSF TyrPK_CSF1-R 409 520 - -
Ahy5g1262 624 PIRSF TyrPK_CSF1-R 34 134 - -
Ahy5g1262 624 PIRSF TyrPK_CSF1-R 557 613 - -
Ahy5g1262 624 PIRSF TyrPK_CSF1-R 326 407 - -
Ahy5g1262 624 SUPERFAMILY Protein kinase-like (PK-like) 303 596 IPR011009 -
Ahy5g1262 624 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 27 624 IPR044812 GO:0019199|GO:0045087
Ahy5g1262 624 SMART LysM_2 173 219 IPR018392 -
Ahy5g1262 624 SUPERFAMILY LysM domain 172 219 IPR036779 -
Ahy5g1262 624 ProSiteProfiles LysM domain profile. 172 218 IPR018392 -
Ahy5g1262 624 Gene3D LysM domain 164 223 IPR036779 -
Ahy5g1262 624 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 27 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1262 Ahy-Chr5 34273028 34277833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1262 300 624 Receptor kinase-like Gene Family AT1G51940 50.755 1.35e-113 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Ahy5g1262 Pkinase 1.10E-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1262 - - gmx:100800907 830.091