Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1245 ATGGAGGAAATGTACGGAGTGCCGTCGACGGCGGAGTACGCCGACAAGGCCCTCATGACGCCGGAGAATCTGATCTTCCCTGCCGACTACCACAGCTTCCTCATGTCCGCTTCCTCGTCCTCCTCCGCCTCCGCCGCCGCAGCTACGATTCCTATGCTCGGATCCGACGAGCTTCTCTCTGCCGCTGGAATTCAACAGCAGCAACCACAGCACAACAACGAGGCCATGGCATCGACCATGATGAAAGCTAAAATCGCTTCTCATCCTCACTACCCTCGCCTCCTGCAGGCCTACATCGATTGCCAGAAGGTCGGCGCACCTCCAGAAATCGCGTGTTTGTTGGAGGAAATTCGCCGCGAAAACGACCTTTTCAAGAGAGACGACGTCGTTTCCACGTGCTTCGGAGCCGATCCCGAGCTGGACGAGTTCATGGTCATGGAAACGTACTGTGAGTTGCTGGTGAAGTATAAATCGGACCTGGCTAGGCCGTTCGATGAGGCAACGAGCTTCCTTAACAAGATCGAAATGCAGTTAAGCAATCTCTGCTGCAACGGTGCTTCTGTTCCAACTCTTTCTGATGATGGAGCTGTGTCTTCAGAGGAAGATTTTAGTGCTGGAGATGGTGATGGAGGTCAAGATGGTCAATCAAGGGGTGAAGATCGTGAGCTTAAGGACAGGCTTCTGCGCAAGTTTGGGAGCCACATTGGTACTTTGAAATTGGAGTTCTCAAAGAAGAAAAAGAAGGGTAAGCTGCCTAAGGAAGCAAGGCAAACACTCCTTCAATGGTGGAATGTTCACTACAAATGGCCTTATCCTACGGAAGCTGACAAGATTGAACTGGCTAAGTCAACAGGGCTAGATCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCACTGGAAGCCATCTGAGAATATGCAATTTTCTATGATGGAAAATCTTGGTGGCCGATTCCTTCCTGATGAATGA 978 0.5 MEEMYGVPSTAEYADKALMTPENLIFPADYHSFLMSASSSSSASAAAATIPMLGSDELLSAAGIQQQQPQHNNEAMASTMMKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLEEIRRENDLFKRDDVVSTCFGADPELDEFMVMETYCELLVKYKSDLARPFDEATSFLNKIEMQLSNLCCNGASVPTLSDDGAVSSEEDFSAGDGDGGQDGQSRGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLGGRFLPDE* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1245 325 SMART KNOX2_2 130 183 IPR005541 GO:0003677|GO:0005634
Ahy5g1245 325 SUPERFAMILY Homeodomain-like 243 314 IPR009057 -
Ahy5g1245 325 ProSiteProfiles 'Homeobox' domain profile. 242 305 IPR001356 GO:0003677
Ahy5g1245 325 SMART ELK_2 222 243 IPR005539 GO:0003677
Ahy5g1245 325 Pfam ELK domain 222 243 IPR005539 GO:0003677
Ahy5g1245 325 MobiDBLite consensus disorder prediction 194 222 - -
Ahy5g1245 325 ProSiteProfiles ELK domain profile. 222 242 IPR005539 GO:0003677
Ahy5g1245 325 SMART KNOX1_2 79 123 IPR005540 GO:0003677|GO:0005634
Ahy5g1245 325 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 315 - -
Ahy5g1245 325 Pfam KNOX1 domain 81 122 IPR005540 GO:0003677|GO:0005634
Ahy5g1245 325 ProSitePatterns 'Homeobox' domain signature. 280 303 IPR017970 GO:0000981|GO:0006355
Ahy5g1245 325 Gene3D - 241 314 - -
Ahy5g1245 325 Pfam Homeobox KN domain 262 301 IPR008422 GO:0003677|GO:0006355
Ahy5g1245 325 Pfam KNOX2 domain 134 182 IPR005541 GO:0003677|GO:0005634
Ahy5g1245 325 CDD homeodomain 254 306 IPR001356 GO:0003677
Ahy5g1245 325 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 315 - -
Ahy5g1245 325 SMART HOX_1 244 309 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1245 Ahy-Chr5 33832643 33842473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1245 1 325 Homeobox Transcription Factor Family AT1G23380 63.018 1.05e-145 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ahy5g1245 KNOX2 3.20E-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1245 - - gmx:100794719 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy5g1245 5 33832643 33842473 Ahy15g1385 15 23691355 23701229 PCT
Ahy5g1245 5 33832643 33842473 Ahy3g3401 3 132742420 132750071 PCT
Ahy15g1385 15 23691355 23701229 Ahy5g1245 5 33832643 33842473 PCT
Ahy3g3401 3 132742420 132750071 Ahy5g1245 5 33832643 33842473 PCT