Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1182 ATGCCATTACCATATTCTAAAATGTATAGGCTTCACTCTCAAATCCACCAGAGCAATGGTGCTCCTATTCTTTCTCCATATTCTCCTTCTTCTTCTTCTTTTTCTTCTTATAGTTCTTCTAATTCAGCTTCTTCATCCTCAGATTCTTCATCTGGGAATAGTAGAATAAGCCCTGCAATTATTTTCATCATAGTAATTTTATCTGTTGTGTTCTTCATCTTGGGCACCCTCCACCTGCTTGTTAGATTTCTCATGAGACAAAGATCTTCTTCTTCCTCATCAATTTCTCAATCCAATAGGTATCCTGAAATGTCTGAATCTGATGCATACCAGAGACAGTTGCAGCAACTATTCCACCTCCATGACTCAGGTTTAGATCAGGCTTTCATTGATGCACTCCCTGTGTTTCTCTACAAGGAGATAATTGGCTTGAAGGAGCCATTTGATTGTGCTGTTTGCCTTTGTGAGTTCTTGGAACAAGACAAGTTGAGGTTGCTGCCAAATTGCAACCATGCTTTTCACATTGACTGCATTGATACTTGGTTGCTTTCAAATTCAACTTGTCCCCTTTGTAGAGGGACACTTTATGCACCAGGGTTTTCATTTGAGACCCCATCCTTTGACTTTGAAGGTCCATGTTATGAGGACGAAGATGGTGTTTCAGTTTCAGGATTTGGTGTCAGTGGTGCTGGTTCTTCTAACAAGCCTGCTGAGAATCACATAAGGAATGGGAAGAGGGTTTTTTCTGTGAGGCTTGGAAAATTCAGAAGCTCAAATAATAATGGAGTAGATGGTGTTGAAAAATGTGAAGGAGAGAGTAGTAATAGTAGTATTAGTTTTAGTAATAGTCATGGTAATTTGGATGCAAGGAGATGCTACTCAATGGGGTCTTACCAATATGTTGTTGCTGATTCTGATTTGAGGGTGGCTTTGTGTCCAAGCATCAGTGGCAGTATGAGACAATTGATTAAGGGAAGAATAGCTACAACAAATGGGAACAATTTTTCTTCAACTGATGTTGATGTTGTTGAGGGAAAAAAGATCAGCAATGCAAGAAAAGGTGAGAGCTTTTCTGTTTCCAAGATATGGCAATGGTCTAGGAAGGATAACAGTAAGTTAAGAAGTTCATCAGAGGCTCGAATTCCATAA 1149 0.3943 MPLPYSKMYRLHSQIHQSNGAPILSPYSPSSSSFSSYSSSNSASSSSDSSSGNSRISPAIIFIIVILSVVFFILGTLHLLVRFLMRQRSSSSSSISQSNRYPEMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFLYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPNCNHAFHIDCIDTWLLSNSTCPLCRGTLYAPGFSFETPSFDFEGPCYEDEDGVSVSGFGVSGAGSSNKPAENHIRNGKRVFSVRLGKFRSSNNNGVDGVEKCEGESSNSSISFSNSHGNLDARRCYSMGSYQYVVADSDLRVALCPSISGSMRQLIKGRIATTNGNNFSSTDVDVVEGKKISNARKGESFSVSKIWQWSRKDNSKLRSSSEARIP* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1182 382 SMART ring_2 150 191 IPR001841 -
Ahy5g1182 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 197 IPR013083 -
Ahy5g1182 382 Pfam Ring finger domain 149 192 IPR001841 -
Ahy5g1182 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 380 - -
Ahy5g1182 382 SUPERFAMILY RING/U-box 129 198 - -
Ahy5g1182 382 CDD RING-H2_PA-TM-RING 149 192 - -
Ahy5g1182 382 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Ahy5g1182 382 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1182 Ahy-Chr5 30937069 30939342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1182 45 372 C3H Transcription Factor Family AT2G18650 40.720 4.35e-57 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1182 - - gmx:100805154 442.58