Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1175 ATGGCTTTGAGGGCGGCTGCGGTTGCGGCGCAGCCTTCGTCGCGCAGTTTATGGCGGCTGCTCTCGAGCCGTTCTGCTTATCCTCCGTCGGCTACTGCCGCAGCGTTTGCTCCACAAGCGGTGGAACCCAAATCCTCCCTCTTCGTTTCCGGGCTTAACAAACGGACGACATCTGAACGCCTACTCCAAGAATTTTCTAAGTTTGGCAAAGTTGTTCGCACTAGGGTGATGATCGATAGAGAAGGTTGTTCTAAAGGGTATGGTTTTGTACAATATGCCACTATAGAAGAGGCTGCAAAGGGCATCGAAAGCATGAATGGAAAGTTTTTGGATGGTTGGATTATATTTGTAGAGTATGCCAAATCTATCCCAGAACCTACACAGCAATCTCACCGGTATCTCCGGCAGTAG 411 0.4988 MALRAAAVAAQPSSRSLWRLLSSRSAYPPSATAAAFAPQAVEPKSSLFVSGLNKRTTSERLLQEFSKFGKVVRTRVMIDREGCSKGYGFVQYATIEEAAKGIESMNGKFLDGWIIFVEYAKSIPEPTQQSHRYLRQ* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1175 136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 112 IPR000504 GO:0003723
Ahy5g1175 136 PANTHER TRANSFORMER-2-RELATED 1 130 - -
Ahy5g1175 136 SUPERFAMILY RNA-binding domain, RBD 35 133 IPR035979 GO:0003676
Ahy5g1175 136 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 1 130 - -
Ahy5g1175 136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 122 IPR000504 GO:0003723
Ahy5g1175 136 SMART rrm1_1 46 118 IPR000504 GO:0003723
Ahy5g1175 136 Gene3D - 11 132 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1175 Ahy-Chr5 30764344 30766697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1175 21 124 Eukaryotic Initiation Factors Gene Family AT4G34110 31.776 6.69e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1175 - - adu:107488830 202.216