Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1143 ATGCGAGATACTGAGAAAAAGTTAAATAAGAGAGGATTTAGAAAATCCAGTCACTCAAGGGAACATACTGATTCAAAGCTTGATTTGTCACCGAGATTCGAAACAAGTAGTAACAAAGGCCAAGGGAAGAAGCAGAAATTGAAATCGAAACCTCACAAACTCGTTGTTTGCACAGCCACATCAAGGGGCACAGCAACTGATTCTTCTTCCATCAAGGGGTCAATCAAAGATGCTTCAAGTGAAAAATTGATTGTTGGACAAAATATGCATTACAATGATGGGAAATCTTTGCAGATGCTCTCTTCGACAAAGCAACCGGGGGAGAAAATTTCTTTTTGTCCTATTGTCGACAGGAACGATGCTGATGGGGAAGTGAATATTCAAAAAGTTAAGAGAAGGAGAAGGAGGAAAAGGCGAAGGGATAATGTGGATCTTGATGATGCTTTGCGCCTGCAGAGGAGAACAAGGTATCTGTTAATCAAAATGAAGGTAGAGCAGAACCTTATGCATACTCTGGAGAAGGCTGGAAAGGTCAAAGATGCATACTGTCGAGAAAAGATTAGACCGGAGAAGGAACTACAAAGAGCAAAGAAGCAGATTTTAAAATGTAAACTTGGTATTCGCGATGTCATTTGCCAGTTGGATGCTCTTAGTTCTGTGGGCAGGATTGAAGATTCCGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCAAAATGCAAGTTGCCTGAAGCATTCCCCGATAATGACATTATACTCTGCGACGGCACATGCAATCGTGCTTTTCACCAAAGATGTCTCGACCCACCGTTGGACACTGAAAATATTCCTCCTGGAGACCAATGCTGGTTTTGCAAGTTTTGTGAATGTAAGATGGAAATACTCGAGGCAACGAATGCTCATCTTGGGACCGACTTCTCCTTGGACAGTACATGGCAGGATGTATTCAAGGAAGAAGCTACTGTACCAGATGATTGTGCCGCTTTATTAAATCCGGAAGAAGAATGGCCGTCAGATGATCCAGAAGATGATGATTATAACCCGGACAGGAGAGAAAACACTCACAACATCAATGCAGAAGGCACTGATGAAAGTCCATCTGATTCAAGCAGCTCTATCAGTCTTTCGTCCTTAAACGATGAATATTCTCCTGTAGACAAAGCCATGAGCCTTGAATATCTTTCTGTTAATAGTTGCGTTGATTCTGATGGATATGGGGAAATAGTATGCAGCCGCAGGCAGCGTAAAGCAGTTGACTACAGGAAACTTTATGATGAAATGTTTAAGGATGCTCCTCCATGTGAACAAGTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGGAGAGAAAAGGAATCTGATGCTGCTAATACACTTATGACGCTGCACGAAAGCGATAATAAATTTCCGAATAATGAGAACAACGATACAGTAAGAGAGGGCACACACACACATATAAAAAGATCTTGCTTCAGAATTCCACATCATGCAGTTGAGAAGCTTCGCCAAGTTTTCGCAGACAATGAACTTCCTCCGAGATCCGTGAAGGAACACATTTCAAAAGAGTTGGGAATCGATGCTGCAAAGGTTAGCAAGTGGTTTAAAAATGCTCGTTACTTAGCTCTTAAAACCAGGAAGCATCAAGTCGAAGGAGGAGAGCTGCCTTTGAGTTTGTTGTGTAAGACCTCGAAGGGTTCCAGTTTACAAAATGTGGACAAAGATGAGATTTTGCAGAAATCAAAGGCCTCTAAAATTGCGATGGTTCATTCACCGAATAATGGTAACGGTATTACCGATAGACAGAAAGTGAAGTCATCTGGCAGTATTTGGAAAAAAAGGCAACCGGAAATATCTCCTGCTAAGACAGCAGAAAATGGCAACAAGGACTTGGAAGAAGGGAGTGATGATGTTGGCTTGAAGAAGCTGCTACAAGAAAAGAAAAGAAAGATGGAATTTGTGTTTGGAGGAGACTCTAAGGCAGCAGAGTTGGAATTTGAAAGACTTAGCAAATTGAAGGCTAAACTAGATAGCATGAAGGTTAAATTAATTGAAGTTCAAAACCACAGAGCAAAGGGTGCAAAGGAACCATGTGTTATATATGTGCCCACAGCTCAGTTAAGGGAAAAAGGTTGA 2151 0.4152 MRDTEKKLNKRGFRKSSHSREHTDSKLDLSPRFETSSNKGQGKKQKLKSKPHKLVVCTATSRGTATDSSSIKGSIKDASSEKLIVGQNMHYNDGKSLQMLSSTKQPGEKISFCPIVDRNDADGEVNIQKVKRRRRRKRRRDNVDLDDALRLQRRTRYLLIKMKVEQNLMHTLEKAGKVKDAYCREKIRPEKELQRAKKQILKCKLGIRDVICQLDALSSVGRIEDSVIAPDGSVYHEHIFCAKCKLPEAFPDNDIILCDGTCNRAFHQRCLDPPLDTENIPPGDQCWFCKFCECKMEILEATNAHLGTDFSLDSTWQDVFKEEATVPDDCAALLNPEEEWPSDDPEDDDYNPDRRENTHNINAEGTDESPSDSSSSISLSSLNDEYSPVDKAMSLEYLSVNSCVDSDGYGEIVCSRRQRKAVDYRKLYDEMFKDAPPCEQVSEDEDWGPGKRKRREKESDAANTLMTLHESDNKFPNNENNDTVREGTHTHIKRSCFRIPHHAVEKLRQVFADNELPPRSVKEHISKELGIDAAKVSKWFKNARYLALKTRKHQVEGGELPLSLLCKTSKGSSLQNVDKDEILQKSKASKIAMVHSPNNGNGITDRQKVKSSGSIWKKRQPEISPAKTAENGNKDLEEGSDDVGLKKLLQEKKRKMEFVFGGDSKAAELEFERLSKLKAKLDSMKVKLIEVQNHRAKGAKEPCVIYVPTAQLREKG* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1143 716 Gene3D - 492 556 - -
Ahy5g1143 716 MobiDBLite consensus disorder prediction 1 52 - -
Ahy5g1143 716 ProSiteProfiles 'Homeobox' domain profile. 490 550 IPR001356 GO:0003677
Ahy5g1143 716 MobiDBLite consensus disorder prediction 363 382 - -
Ahy5g1143 716 CDD homeodomain 493 554 IPR001356 GO:0003677
Ahy5g1143 716 PANTHER POLYCOMB PROTEIN PCL 1 697 - -
Ahy5g1143 716 MobiDBLite consensus disorder prediction 334 382 - -
Ahy5g1143 716 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 1 697 - -
Ahy5g1143 716 SMART PHD_3 240 293 IPR001965 -
Ahy5g1143 716 SUPERFAMILY FYVE/PHD zinc finger 232 298 IPR011011 -
Ahy5g1143 716 ProSitePatterns Zinc finger PHD-type signature. 241 292 IPR019786 -
Ahy5g1143 716 SMART HOX_1 492 554 IPR001356 GO:0003677
Ahy5g1143 716 ProSiteProfiles Zinc finger PHD-type profile. 238 295 IPR019787 -
Ahy5g1143 716 MobiDBLite consensus disorder prediction 594 640 - -
Ahy5g1143 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 289 IPR013083 -
Ahy5g1143 716 MobiDBLite consensus disorder prediction 594 610 - -
Ahy5g1143 716 MobiDBLite consensus disorder prediction 439 460 - -
Ahy5g1143 716 Pfam Homeodomain 500 545 IPR001356 GO:0003677
Ahy5g1143 716 Pfam PHD-finger 240 295 IPR019787 -
Ahy5g1143 716 CDD PHD_PRHA_like 240 292 IPR045876 -
Ahy5g1143 716 Coils Coil 674 694 - -
Ahy5g1143 716 SUPERFAMILY Homeodomain-like 493 554 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1143 Ahy-Chr5 29703314 29707896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1143 138 554 Homeobox Transcription Factor Family AT4G29940 53.472 1.80e-135 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Ahy5g1143 Homeodomain 4.80E-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1143 - - gmx:100787118 855.129