Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1125 ATGACGACTCGAATAGCGCCTGGTGTTGGCGCCAACTTGCTTGGCCAACACTCTGCCGAGAGGAATCAGGACGCCACCGCCTATGTTGGCAATCTCGACCCCCAAGTTCCCGAGGAGTTGCTCTGGGAGCTTTTCGTTCAGGCTGGCCCTGTCGTTAATGTCTATGTTCCCAAGGACAGAGTCACTAACCAACACCAGGGATATGGATTTGTTGAATTCCGTAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAATATGATTAAACTTTACGGCAAGCCAATTCGTGTAAATAAGGCAACCCAAGATAAAAAGAGCTTGGATGTGGGGGCAAACCTTTTCATTGGCAACCTTGATCCTGATGTAGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATTATGAGAGATCCTGATACCGGAAATTCCCGTGGTTTTGGTTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCTATTGAGGCAATGAATGGGCAATATCTTTGCAATCGCCAAATTACAGTGTCATATGCTTACAAAAAAGACACTAAAGGGGAACGGCACGGCACGCCAGCAGAAAGAGTTTTGGCTGCAAGCAATCCTACTGCGCAGAAGAGTAGGCCTCATACGAGATTCGCCAGTGCACCTCCAACACTCGCCAATGTTGCTCAGGCTAATGGTACTGTTGCTGTTCCGGTACCTCCTCACCCCTTTGCTAATGGAGTTGCTCCACCTCCCATTCCTGCCCTCCGACCACCACCACCACCCCCTCAAGCAGCAGCATTTCAGCCTATGCCAGGAGCTGGGCAACCAACATGGCATCAACAACAGCCCGGACTCCCGCCTGGAATGCCCCCACCTCAGGTCCAGCAGTTCCGGCCACCTCCATCTGGTATGCCAATGCCGCCACCTCCACAAGCTGTTTCGGCTCCTCCAAGGCCTCTTCCGCCACCAGCAGGAATGGTAAGCCAACCACCTGTTTGGCGACCACAACCACCCCCACCGCAGCAACAGGGTGGACGACCTATGGCATATCCTCAACCCTCAATGCCTCCACCTTCCTATAGCCAGATGCCACCACCTCAATGA 1122 0.5098 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVPEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKATQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTRFASAPPTLANVAQANGTVAVPVPPHPFANGVAPPPIPALRPPPPPPQAAAFQPMPGAGQPTWHQQQPGLPPGMPPPQVQQFRPPPSGMPMPPPPQAVSAPPRPLPPPAGMVSQPPVWRPQPPPPQQQGGRPMAYPQPSMPPPSYSQMPPPQ* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1125 373 MobiDBLite consensus disorder prediction 193 224 - -
Ahy5g1125 373 CDD RRM2_SF3B4 111 193 IPR034159 -
Ahy5g1125 373 CDD RRM1_SF3B4 28 100 IPR034158 -
Ahy5g1125 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Ahy5g1125 373 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Ahy5g1125 373 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 355 - -
Ahy5g1125 373 Gene3D - 112 200 IPR012677 -
Ahy5g1125 373 MobiDBLite consensus disorder prediction 289 373 - -
Ahy5g1125 373 MobiDBLite consensus disorder prediction 253 273 - -
Ahy5g1125 373 SMART rrm1_1 26 99 IPR000504 GO:0003723
Ahy5g1125 373 SMART rrm1_1 113 187 IPR000504 GO:0003723
Ahy5g1125 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Ahy5g1125 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Ahy5g1125 373 PRINTS Proline rich extensin signature 259 280 - -
Ahy5g1125 373 PRINTS Proline rich extensin signature 282 298 - -
Ahy5g1125 373 PRINTS Proline rich extensin signature 303 320 - -
Ahy5g1125 373 PRINTS Proline rich extensin signature 325 350 - -
Ahy5g1125 373 PRINTS Proline rich extensin signature 212 228 - -
Ahy5g1125 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Ahy5g1125 373 MobiDBLite consensus disorder prediction 253 373 - -
Ahy5g1125 373 MobiDBLite consensus disorder prediction 208 224 - -
Ahy5g1125 373 PANTHER TRANSFORMER-2-RELATED 1 355 - -
Ahy5g1125 373 Gene3D - 16 111 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1125 Ahy-Chr5 28951389 28957437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1125 18 222 Eukaryotic Initiation Factors Gene Family AT4G34110 26.761 3.12e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1125 K12831 - gmx:100791039 521.161