Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1110 ATGAGACTCTTTTGGCAGATTTGGGATACAACAGGACAAGAAAGGTTCAATAGTTTAGGTGCTGCATTTTATAGAGGTGCAGATTGTTGTGTTTTGGTGTATGATGTAAATGCACACAACACATTTGACACACTAAACAATTGGCATGATGAGTTCATTAAGCAGAATTCTTGGTGGCAGTCATGGTGTGCCTCAAGTACATTACAAGGGCAGCTTCTGTGGAATTACTGCATTTTAGATGAAGGGCATATAATCAAGAATGCTAAGTCCAAAGTTACACTTGCTGTAAAGCAGTTAAAAGCCCAACACCACTTGATATTGAGTGGGACTCCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCTGGATTTCTTGGAACAGAGAGACAGGTAAAGTCTTATTTTCCTTTCCTCATACTAATTATTACTTATGCTCTACTGATTTGGGACGAAAAGAATTTGAAGAGGCTTAAAAGCAGTGGAAAGTTAAAGAAAGTTCTTTGGAGACTAGGAATTTTGGTGGGTTACTTTTTCAAGCTCATGCCAATGCTATCAGAAATGTTATGA 585 0.3778 MRLFWQIWDTTGQERFNSLGAAFYRGADCCVLVYDVNAHNTFDTLNNWHDEFIKQNSWWQSWCASSTLQGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHHLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQVKSYFPFLILIITYALLIWDEKNLKRLKSSGKLKKVLWRLGILVGYFFKLMPMLSEML* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1110 194 Pfam Ras family 6 57 IPR001806 GO:0003924|GO:0005525
Ahy5g1110 194 PANTHER SNF2/RAD54 HELICASE FAMILY 70 141 - -
Ahy5g1110 194 PANTHER B-TFIID TATA-BOX-BINDING PROTEIN-ASSOCIATED FACTOR 1 70 141 - -
Ahy5g1110 194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 151 IPR027417 -
Ahy5g1110 194 ProSiteProfiles small GTPase Rab1 family profile. 1 179 - -
Ahy5g1110 194 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 66 129 IPR014001 -
Ahy5g1110 194 Pfam SNF2-related domain 66 142 IPR000330 GO:0005524|GO:0140658
Ahy5g1110 194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 56 IPR027417 -
Ahy5g1110 194 Gene3D - 2 64 IPR027417 -
Ahy5g1110 194 Gene3D - 65 172 IPR038718 -
Ahy5g1110 194 SMART rab_sub_5 6 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1110 Ahy-Chr5 27861080 27863154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1110 74 126 RAD5 or RAD16-like Gene Family AT5G22750 52.830 3.17e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy5g1110 SNF2_N 2.60E-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1110 K15192 - adu:107469552 241.891