Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1072 ATGTCTCGCACGTGCTCACAGTGTGGAAACAACGGGCACAACTCCCGCACATGCACAGACGCTTCTCTCGCTGCCGGATCGGTCTCCGGTGGCGGAACCCCTCAAAGAGAGAACGGCATCATGCTCTTCGGCGTAAGACTCACCACCACCGAAGGGACCTCATCGTCATTCAGAAAAAGTGCTAGTATGGGTAATTTGTCACAGTTTGATCAACAACCACCGCAGGATCCAATCGTTGCTGACGCCGGCTATGTGTCCGATGACGTCGTTCACGCCTCCGGCCGCAGCCGCGAGCGCAAACGAGGTGTTCCTTGGACTGAAGAGGAGCACAAATTGTTCTTGTTGGGTTTACACAAGGTTGGAAAAGGTGACTGGAGAGGAATTTCTAGAAATTTTGTGAAGACTCGGACTCCAACTCAGGTTGCTAGTCACGCACAGAAATATTTCCTCCGCCGCCACAATCAGAACCGCCGCCGCAGAAGGTCTAGTCTGTTTGATATCACCACTGATACGGTGATGGAATCGTCTGCCATGATGGAAGAGCAAGTTCAGCAAGAAACTGTTGCGCCACCCACACCCTCTACATATTCGTCATCAAACTACAACAACTTATCTAGCTCTACTTTCCCCATGGCTTTATCTTCTGTGATGTTGCCATTAGCTGCTAAACCAATAAGGCCAACGCCTATTTTGCCTGTGCCACCATCTTCTAAGATGGCTAATTTGAACCTGAAAGAGAAAATAACTCTGAATACAGAATTTCGACCTCCACCATTTGTTCTTAACTTAGGGCCGCAGCAATTCCGGAATCAGTCCCCAGACGAAAATAATGATCGCTCCTCGCCATCCTCGTCATCCACGTCGTCTTTTCAAGCAGGAAATTTCAATGGTGGTGGAGATAGCATAATTAGTGTTGCTTGA 921 0.4897 MSRTCSQCGNNGHNSRTCTDASLAAGSVSGGGTPQRENGIMLFGVRLTTTEGTSSSFRKSASMGNLSQFDQQPPQDPIVADAGYVSDDVVHASGRSRERKRGVPWTEEEHKLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSAMMEEQVQQETVAPPTPSTYSSSNYNNLSSSTFPMALSSVMLPLAAKPIRPTPILPVPPSSKMANLNLKEKITLNTEFRPPPFVLNLGPQQFRNQSPDENNDRSSPSSSSTSSFQAGNFNGGGDSIISVA* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1072 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 153 IPR017930 -
Ahy5g1072 306 SUPERFAMILY Homeodomain-like 99 152 IPR009057 -
Ahy5g1072 306 SMART sant 101 151 IPR001005 -
Ahy5g1072 306 MobiDBLite consensus disorder prediction 259 306 - -
Ahy5g1072 306 CDD SANT 104 149 IPR001005 -
Ahy5g1072 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 100 151 IPR006447 GO:0003677
Ahy5g1072 306 Pfam Myb-like DNA-binding domain 104 149 IPR001005 -
Ahy5g1072 306 PANTHER TRANSCRIPTION FACTOR KUA1 1 303 - -
Ahy5g1072 306 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Ahy5g1072 306 MobiDBLite consensus disorder prediction 264 298 - -
Ahy5g1072 306 MobiDBLite consensus disorder prediction 178 199 - -
Ahy5g1072 306 ProSiteProfiles SANT domain profile. 100 153 IPR017884 -
Ahy5g1072 306 Gene3D - 103 154 - -
Ahy5g1072 306 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 1 303 - -
Ahy5g1072 306 ProSiteProfiles Myb-like domain profile. 97 149 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1072 Ahy-Chr5 25957870 25959884 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ahy5g1072 Myb_DNA-binding 1.10E-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1072 - - gmx:778178 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy5g1072 5 25957870 25959884 Ahy15g1552 15 31176540 31178516 PCT
Ahy15g1552 15 31176540 31178516 Ahy5g1072 5 25957870 25959884 PCT