LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy5g1059	ATGGCACTGAATGGTGGTTCCTCAGGAAGATCGAAATGGAAGTATCATATCTTCTTGAGTTTTAGAGGAGAAGACACCCGCCTAGGTTTCACTGACCACTTATACACAGCCTTGCAGAAGAGAAGCATTGATACTTTCAGAGACAATGAAGAGCTTCGAACAGGTGAATTTATCTCTCAACAGCTGCTTCATGCGATTGAGGATTCTCTCTGCGCAGTTGTTGTGTTATCCCCAAATTATGCAAACTCAGGATGGTGTTTAGATGAGCTCAAAAAGATCGTTGAAACAAAAGGAAGATTTGGGATGATTGTTCCGGTCTTCTATGATGTGGATCCCTCCGATGTACGATACCAAAAGGGAAAGTTTGCAGAAGCTTTTGAGAAACACGAAGAAAGGTATAGAGCACAAAAAGACAAGGTTCAGCAGTGGAGAGATGCTTTGACATTCGTTGCCAACTTAAGTGGCTGCACCTCTCAAGATCGATATGAATCGCAACTCATTGATGAAATTGCTGAAGAAGTATGGACTAAAGTAGAACCTCAGTTGCCAACAAAGGATGATGATGATCTCGTTGCAATTGAATCAAAAGTAAACGATGTGCGTTCATGTTTAAGCCTAGAGCCGAAAGGAGATGTTCTCTTTCTTGGAATTTGGGGCATGGGCGGGTTAGGGAAAACAACTCTTGCCTCTGTTGTCTGTAAAAGAATCAGAAGAGAATTTGAAGATTATTGCATTCTCCGAGTTGGAGATGTTTCAAAGGAAGGAGATCTAGTTAACTTACAAAATCAACTTCTTTCACATCTGAAACTAAGGAGCAGAGTAATTGAAACTTTAGTCCAAGGAAGGGACAACATCAGAAACCTTCTGTACAAAAAAAGGATTCTTATTGTCCTAGATGATGTGAGAACTATAGAACAGCTAGAGAATTTGGTAGGAAACAAGGAATGGTTTGGTCCGGGAAGCAGAATAGTTGTTACAACTCGGGACAAGAACCTGCTTAGTTCACATGGTGTGTTTAAAATCTATGAGATGGAAGTCTTGAACACTGATGAATCCCTTCAGCTCTTTCATCAAGAAGCTTTCAAAGGAGAGCTACCAAAAGAAGAGTACTTGGAGTTGTCGAAAAGGTTTGTGAGCTATACTGGAGGCCTTCCCTTGGCACTTAAAGTGCTAGGATCTAATCTTCGTAGAAGAAGCATTGATGAATGGGAAGATGCTTTAGATGAAATAAGAAAAGATCCAGATGGTGGAATAATGAACTTACTCAGGATAAGTTATGATATGCTGAAAGAAGGGTACAAGACCATATTTCTTGATATTGCATGCTTTTTTAGGGGGTGGTACAGAGATAAAGTGACAAAAATATTGACAAATTGTGGCCTAAATCCGACAAAAGGAATAAGTGAGCTGATAGGAAAATCATTGATTACCTGCAACAAAGGAGTTCTAGGGATGCATGATTTGCTTGAAGATATGGGTAAACAAATAGTTTTTCAAGAATCTGAAAAGGATCCTGGAAAACGCAGTCGGTTGAGCTCTCTAGATGATATTGATCAAGTATTGGAAGAAAATACGGGAACTGAGAACATTGAAGGCATGGTTTTGAAGCAGCAATTCGAGTCATACAGTAAAGCTGCAAATTGGCACCCGGAAGCGTTCTCTAAGATGCGCAACCTTAGACTTCTCATCGTATTATGTGATTTGCACCTCTCGCATGGTTTCAAATGTCTTCCTAGGTCTCTAAAGGTTCTTATTTGGACAGAATGTCCTTTGAAAGCTCTACCGCTTGACATAGAACTACGCCGACTTGTTCACTTGCAGATGAACAATAGCAAGCTAGAAAAACCATGGAATGGAAGTCAGGTGTTCGAGGGACTGAAAGTTATTGACTTGAGTTATTCCAAGGATCTGATTCAGACTCCGGATATTTCTGAAGTTCCATTACTTGAAGAGCTCTTCCTTGATGGTTGTGTATCGCTGGTTGAACTTCACCTCAGAATCTTGCAATGTTGA	2013	0.4034	MALNGGSSGRSKWKYHIFLSFRGEDTRLGFTDHLYTALQKRSIDTFRDNEELRTGEFISQQLLHAIEDSLCAVVVLSPNYANSGWCLDELKKIVETKGRFGMIVPVFYDVDPSDVRYQKGKFAEAFEKHEERYRAQKDKVQQWRDALTFVANLSGCTSQDRYESQLIDEIAEEVWTKVEPQLPTKDDDDLVAIESKVNDVRSCLSLEPKGDVLFLGIWGMGGLGKTTLASVVCKRIRREFEDYCILRVGDVSKEGDLVNLQNQLLSHLKLRSRVIETLVQGRDNIRNLLYKKRILIVLDDVRTIEQLENLVGNKEWFGPGSRIVVTTRDKNLLSSHGVFKIYEMEVLNTDESLQLFHQEAFKGELPKEEYLELSKRFVSYTGGLPLALKVLGSNLRRRSIDEWEDALDEIRKDPDGGIMNLLRISYDMLKEGYKTIFLDIACFFRGWYRDKVTKILTNCGLNPTKGISELIGKSLITCNKGVLGMHDLLEDMGKQIVFQESEKDPGKRSRLSSLDDIDQVLEENTGTENIEGMVLKQQFESYSKAANWHPEAFSKMRNLRLLIVLCDLHLSHGFKCLPRSLKVLIWTECPLKALPLDIELRRLVHLQMNNSKLEKPWNGSQVFEGLKVIDLSYSKDLIQTPDISEVPLLEELFLDGCVSLVELHLRILQC*	671

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy5g1059	670	Pfam	TIR domain	14	192	IPR000157	GO:0007165
	Ahy5g1059	670	ProSiteProfiles	TIR domain profile.	13	178	IPR000157	GO:0007165
	Ahy5g1059	670	SUPERFAMILY	L domain-like	540	664	-	-
	Ahy5g1059	670	Coils	Coil	126	146	-	-
	Ahy5g1059	670	PRINTS	Disease resistance protein signature	381	395	-	-
	Ahy5g1059	670	PRINTS	Disease resistance protein signature	288	302	-	-
	Ahy5g1059	670	PRINTS	Disease resistance protein signature	621	637	-	-
	Ahy5g1059	670	PRINTS	Disease resistance protein signature	214	229	-	-
	Ahy5g1059	670	Pfam	NB-ARC domain	194	416	IPR002182	GO:0043531
	Ahy5g1059	670	Gene3D	Ribonuclease Inhibitor	541	670	IPR032675	-
	Ahy5g1059	670	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	10	667	IPR044974	GO:0006952
	Ahy5g1059	670	Gene3D	-	346	430	IPR042197	-
	Ahy5g1059	670	Gene3D	-	9	178	IPR035897	-
	Ahy5g1059	670	SUPERFAMILY	Toll/Interleukin receptor TIR domain	7	155	IPR035897	-
	Ahy5g1059	670	Gene3D	-	179	340	IPR027417	-
	Ahy5g1059	670	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	10	667	-	-
	Ahy5g1059	670	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	175	440	IPR027417	-
	Ahy5g1059	670	SUPERFAMILY	"Winged helix" DNA-binding domain	418	521	IPR036390	-
	Ahy5g1059	670	SMART	till_3	14	153	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy5g1059	Ahy-Chr5	25431974	25438548	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy5g1059	11	657	WRKY Transcription Factor Family	AT4G12020	30.357	5.04e-72	252

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy5g1059	-		-	ahf:112800995	1346.26