Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1015 ATGAGTCGCAAGAGAGAGAAACCCTCTTACACTTCTTCCCGCCACGCCCCCTACCCGAAGCGCCGCCGCCCACCGCCGGAGACCGTGCTTCAGGAGCCGGAGGACCGACCATCCTCGAGGCCTGCGCCCCCGTCCGCGGTGGTCATTATGGGCCTTCCCAACGACTGCTCCGTCCTTGACCTCAAGTCCCGCTTCGAGATCTACGGCCCCATTGCTCGCATTCGCATCGACGGCGACGCGGTCGGATATGTCACCTACCGGACCAAGGACTCCGCCGACGCCGCTATCGCCGCCGGCGCCGACCCGTCCTTTGGAATTACTCTTCACTCCAAAAAGGTTCAGGTGTTGTGGGCAACTGACCCTCTAGCCATGTGGAGGGAAGGAATTGGTAATAACAACAAGGACAAAGGATCAATGTCGAAGCTTGTGCGTGCTGAGGTACCTTTGAGAAGACATGGAAGGGGTAATAGACTTGCTTCAGCTATAGGCAATACCAGAACCAGTGTCGATAACGCAGGTAGCTCGGTTCTTGAAGTACCTTTCAAGGGAAGAGAAATTGTTGCTTATGATGATATCCTCTGA 582 0.5619 MSRKREKPSYTSSRHAPYPKRRRPPPETVLQEPEDRPSSRPAPPSAVVIMGLPNDCSVLDLKSRFEIYGPIARIRIDGDAVGYVTYRTKDSADAAIAAGADPSFGITLHSKKVQVLWATDPLAMWREGIGNNNKDKGSMSKLVRAEVPLRRHGRGNRLASAIGNTRTSVDNAGSSVLEVPFKGREIVAYDDIL* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1015 193 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 97 IPR000504 GO:0003723
Ahy5g1015 193 Gene3D - 1 122 IPR012677 -
Ahy5g1015 193 SUPERFAMILY RNA-binding domain, RBD 20 129 IPR035979 GO:0003676
Ahy5g1015 193 MobiDBLite consensus disorder prediction 20 34 - -
Ahy5g1015 193 CDD RRM_SF 47 89 - -
Ahy5g1015 193 SMART rrm1_1 46 116 IPR000504 GO:0003723
Ahy5g1015 193 MobiDBLite consensus disorder prediction 1 45 - -
Ahy5g1015 193 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 120 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1015 Ahy-Chr5 22122825 22124730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1015 1 193 Homeobox Transcription Factor Family AT1G27050 52.632 1.28e-57 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1015 - - gmx:106797175 265.774