Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g1002 ATGGAGTCATCATCATCAACATCATCATCATCGACAAGAAGAACAACATCAACCGAAATAACATCAACATCGTTGATGGCGATACAGAATTCCTTCGACTCCGTTTATTCCCGCTACGCACGCGAGGCGCTCGACGAATTGCCTGGTAACTTCACCATCACCGACCCATCAATCCCAGGCCACCCAATCATCTTTGCCAGCCAAGGCTTCCTCAAGATGACCGGTTACGACCGAGACGAGGTTGTCGGAAGAGGTGGGGCCATGTTCCAAGGTGATAGAACTTCTAGAAGGTCGTTGATGGAGGTCAGGGAGGCCGTTAGGAATGATCGGAGCTGCCAGGTCAGCTTGCTTAACTACCGCAAGGATGGGACACCCTTTTGGATGCTCTTTCATGTGAGTCCTGTTTTTGGAAGGGATGGTGGCCGGGTTGTTCACTTTGTGGCGGTTCAGGTTCCTTTGGAAGGGAGAAGGCTGAGGAGGCGACGGTCTATTGGGTGCCGGAGAGGTAGCGGCGATGACGGTGGTAGTGGCGATTATGTTCTCGGGTGTTGTAGGAAGGAGGTGTGCAATGATAACAGCTTGGAGGTTGAGTTAGTTTCTTCCATGGATCACGGGTTGGACCATGATACTAAAGAATTGGACAGTGACAAGCCGTGTGAGGCAACTGACGACGAGAAGAGAAGTGTGATGGTTGCAATGGACAACATTTTTTCTGTGCTAACTCACTACAGCGAGTCAACAGGCAGATTGGTATGTAGAAAGAGATGCAGCATACCTGACATGGGTCTTCTTAGCACTTCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCGCATTTACCTGACATGCCTATTGTATATGCCAGTGATGCCTTCTTGAATTTGACAGGTTATGCAAGGGATGAAGTTTTGGGCCGCAATTGTAGATTTTTAGGTGGACCGGATACTGATGACTCAACTTTATATCTGATAAGGGAAAGCATTAAAAATGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATAGAAGCTCATTTTGGAACCTTCTCCACATCTCACCCGTACGTGATGCTTCTGGCAAGGTAGCATACTATGTTGGTGTTCAAATAGAAGATGAGTGTAAAAACGAGGATAGACAAGGCTTGAGCCCTGAGAAGAGGCAGCTTAGTGTGGTTGGTGTGGTGAAGGTTGCTGTCAGGAGTTTATCAATGCATGCTGGATCTTCAAAGTCATAG 1260 0.4675 MESSSSTSSSSTRRTTSTEITSTSLMAIQNSFDSVYSRYAREALDELPGNFTITDPSIPGHPIIFASQGFLKMTGYDRDEVVGRGGAMFQGDRTSRRSLMEVREAVRNDRSCQVSLLNYRKDGTPFWMLFHVSPVFGRDGGRVVHFVAVQVPLEGRRLRRRRSIGCRRGSGDDGGSGDYVLGCCRKEVCNDNSLEVELVSSMDHGLDHDTKELDSDKPCEATDDEKRSVMVAMDNIFSVLTHYSESTGRLVCRKRCSIPDMGLLSTSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLNLTGYARDEVLGRNCRFLGGPDTDDSTLYLIRESIKNEQPCTVRILNYRKDRSSFWNLLHISPVRDASGKVAYYVGVQIEDECKNEDRQGLSPEKRQLSVVGVVKVAVRSLSMHAGSSKS* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g1002 419 CDD PAS 287 376 IPR000014 -
Ahy5g1002 419 ProSiteProfiles PAS repeat profile. 291 337 IPR000014 -
Ahy5g1002 419 ProSiteProfiles PAS repeat profile. 36 84 IPR000014 -
Ahy5g1002 419 CDD PAS 63 150 IPR000014 -
Ahy5g1002 419 PANTHER PROTEIN TWIN LOV 1 27 417 - -
Ahy5g1002 419 SUPERFAMILY PYP-like sensor domain (PAS domain) 53 149 IPR035965 -
Ahy5g1002 419 Pfam PAS domain 278 377 IPR000014 -
Ahy5g1002 419 Pfam PAS domain 60 150 IPR000014 -
Ahy5g1002 419 SMART pas_2 38 107 IPR000014 -
Ahy5g1002 419 SMART pas_2 266 339 IPR000014 -
Ahy5g1002 419 PANTHER PROTEIN TWIN LOV 1 27 417 - -
Ahy5g1002 419 Gene3D PAS domain 278 417 - -
Ahy5g1002 419 Gene3D PAS domain 50 168 - -
Ahy5g1002 419 ProSiteProfiles PAC domain profile. 110 165 IPR000700 -
Ahy5g1002 419 SUPERFAMILY PYP-like sensor domain (PAS domain) 281 377 IPR035965 -
Ahy5g1002 419 ProSiteProfiles PAC domain profile. 338 392 IPR000700 -
Ahy5g1002 419 TIGRFAM sensory_box: PAS domain S-box protein 63 146 IPR000014 -
Ahy5g1002 419 TIGRFAM sensory_box: PAS domain S-box protein 291 376 IPR000014 -
Ahy5g1002 419 MobiDBLite consensus disorder prediction 1 22 - -
Ahy5g1002 419 SMART pac_2 341 382 IPR001610 -
Ahy5g1002 419 SMART pac_2 113 156 IPR001610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g1002 Ahy-Chr5 20274738 20279276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g1002 268 410 AGC Kinase Gene Family AT5G58140 42.657 2.06e-37 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g1002 - - adu:107489171 770.385