Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0980 ATGATGGATATTGAGGAAGAATCAGTGGGTGTTAAAAAGGCATGTCCAACACGAGGTGTTAAGAGAAGTCGTTCAGCCGAAGTACATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTGCAAGATCTCATACCAAACTGCAATAAGGTTCGCTTGTTTATACTTTCAAACCTTGAGCCATATTTGCTTCTCCTTGAGCCGAAAATGCAACCAGAGAAACAGAGAAATGAAACAAAGAGGCAGGAAGCATGCCGGCTTGATAGAAATTCCCTGATAGGAGAGGTTCCTACAAATCTTTGTAAGAGATGA 330 0.4182 MMDIEEESVGVKKACPTRGVKRSRSAEVHNLSERRRRDRINEKMRALQDLIPNCNKVRLFILSNLEPYLLLLEPKMQPEKQRNETKRQEACRLDRNSLIGEVPTNLCKR* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0980 109 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 24 81 IPR011598 GO:0046983
Ahy5g0980 109 PANTHER TRANSCRIPTION FACTOR PIF3 3 57 IPR044273 GO:0003700|GO:0006355
Ahy5g0980 109 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 27 90 IPR036638 GO:0046983
Ahy5g0980 109 PANTHER TRANSCRIPTION FACTOR PIF3 3 57 - -
Ahy5g0980 109 MobiDBLite consensus disorder prediction 20 34 - -
Ahy5g0980 109 MobiDBLite consensus disorder prediction 1 34 - -
Ahy5g0980 109 Pfam Helix-loop-helix DNA-binding domain 28 75 IPR011598 GO:0046983
Ahy5g0980 109 Gene3D - 20 89 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0980 Ahy-Chr5 18340424 18345068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0980 3 77 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 65.000 3.98e-22 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy5g0980 HLH 9.00E-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0980 K12126 - ahf:112696927 159.458