Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0970 ATGCAAGATAATATGAAGAAGCAGAAGCAGAAGCAGGTAGTGGTGGTGGCCAATAATGAAGAATCTAATAAGAAGAAGGAGCATCGCATTGTTATGTGGACTCAAGAGGAGGATGATATTCTGAGGGAGCAGGTTGGAATCCATGGAACTGAAAATTGGGGTATTATTGCTTCTAAATTCAAGGATAAAACTACAAGACAGTGCAGAAGGAGATGGTTCACTTACTTGAATTCTGATTTCAAGAAAGGGGGTTGGTCACCGGAGGAAGATATGCTCTTGTGCGAGGCTCAGAAACTATTGGGTAACCGGTGGACAGAAATATCAAAGGTGGTTCCAGGCAGAACGGATAATGCTGTTAAGAACCGGTTCTCCACATTGCGCAAAAAGAGAGCGAAATATGAAGCATTAGCAAAAGAGAACCACACTTCTTACACCAATTCAAATAATAAGAGGGTTATTCTACAACATGGACATGTTACAGATTCAGCATCAGAATCTGGTGTGTCTACTAAGAAGATGAGGAGGCCGCATATTCCAGTGGTAGAAGAAAGGATAAACTATGGAGACAGATTACATAAACAAAATGGAACTCAGATAAGTCAGCAGCCAAGAGCGCCATTCGCCGTGCTACCTCCGAACTCTCATAATGTCAACAACTTATCAGATCAGCATGATATCTGCAGTTTGAAGTTTAATGGTTATGGCCAAAACAAGTTGCAAGGGACATTCCTCAAAAAGGATGATCCAAGGATAAACGCATTGATGCAACAAGCAGAGTTGCTAAGTTCATTAGCTCTAAAAGTTGATGCAGAGAACATGGACCAAAGTCTAGAAAATGCATGGAAGGTTCTTCAAGAGTTTCTGAAACGAACCAAAGAGTCTGATGGTCCGAGATGTAAGGTTCCGGATCTACAGCTTGTAGATCTAGGAGATTGGTTGGAGGACTTGAAGAGTAACAGTGAGGGAATTCAACCATGTTGGAGGAAATTTAAATCCATTCAAAACACAAAGTTCTATGAGGACTATAGTTTCGGATTGTATTCTAGGCAAATGGAATTATATGAAGACTCTCCTGGCAGTTCTGAGTACAGCACAGGATCAACTCTCCTCCCTCATTTGGGTGCCGACAACTCGGAACACTCGCTGCATCAGGAAATTGAAACTGAACTCAAGTCAATACACATTGGAGATCAAAAGGAATGTGAGCAAGGTGTTCTTTCTACTGCAACTTTGGATCAAGATGTTTTCACATTAAATAAGGATCGGATGAACAAAGATGGCATTGTTTCTGCCTCATCAATGACAGAGTTCAGTTCCCCTCTTCAAGTTACACCTCTGTTCAGATCCTTGGCTGCAGGAATTCCTAGCCCTCAATTTTCCGAAAGCGAGAGGAACTTTCTCATGAAAACACTTGGAATGGAATCTCCATCCCTCAACAACATAAGCTTAAACCCCTCGCAACCACCACTCTGCAAAAGAGCCCTGCTACAAAGCCTATAA 1500 0.4187 MQDNMKKQKQKQVVVVANNEESNKKKEHRIVMWTQEEDDILREQVGIHGTENWGIIASKFKDKTTRQCRRRWFTYLNSDFKKGGWSPEEDMLLCEAQKLLGNRWTEISKVVPGRTDNAVKNRFSTLRKKRAKYEALAKENHTSYTNSNNKRVILQHGHVTDSASESGVSTKKMRRPHIPVVEERINYGDRLHKQNGTQISQQPRAPFAVLPPNSHNVNNLSDQHDICSLKFNGYGQNKLQGTFLKKDDPRINALMQQAELLSSLALKVDAENMDQSLENAWKVLQEFLKRTKESDGPRCKVPDLQLVDLGDWLEDLKSNSEGIQPCWRKFKSIQNTKFYEDYSFGLYSRQMELYEDSPGSSEYSTGSTLLPHLGADNSEHSLHQEIETELKSIHIGDQKECEQGVLSTATLDQDVFTLNKDRMNKDGIVSASSMTEFSSPLQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSLNNISLNPSQPPLCKRALLQSL* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0970 499 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Ahy5g0970 499 CDD SANT 33 76 IPR001005 -
Ahy5g0970 499 CDD SANT 85 126 IPR001005 -
Ahy5g0970 499 SUPERFAMILY Homeodomain-like 31 123 IPR009057 -
Ahy5g0970 499 PANTHER TRANSCRIPTION FACTOR MYB88 11 496 - -
Ahy5g0970 499 ProSiteProfiles Myb-like domain profile. 33 76 IPR001005 -
Ahy5g0970 499 Gene3D - 83 155 - -
Ahy5g0970 499 PANTHER MYB PROTEIN-RELATED 11 496 - -
Ahy5g0970 499 Gene3D - 19 81 - -
Ahy5g0970 499 Pfam Myb-like DNA-binding domain 33 93 - -
Ahy5g0970 499 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 76 IPR017930 -
Ahy5g0970 499 SMART sant 81 129 IPR001005 -
Ahy5g0970 499 SMART sant 29 78 IPR001005 -
Ahy5g0970 499 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0970 Ahy-Chr5 16917511 16923642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0970 1 328 MYB Transcription Factor Family AT2G02820 55.422 2.89e-120 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy5g0970 Myb_DNA-bind_6 2.80E-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0970 K09422 - gmx:100807667 679.863