Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0897 ATGATTTCAGCTCTTTCGTGGATACCGATAGGTGCTTCGAAGGTGGAACCCACAATAGCTGAACCTCCTTCCAAGGAAGAAATTCAAGATATAATCACCACCGCCGCCGCCAGTACAGCAGACAGTGAAAATGAGGAAGAAGCAGGGGATGAACGCATGGATGATGCCGGTGGTGCCGTTGATGAAGTTGTGCGAGCACTCAATGTTGCTGATGCTCTCAGGAAGGCTGATAAATTGGACGATATTGCCCTCGGTTTGAAGGAGCTTGACATGGAACGTTACGATGATGAAGATGAAGGAGTTGAGGTATTTAGTTCCGGGATTGGTGATCTTTATTATCCAAGTAACGACCTGGATCCTTATATCAAAGATAAGAACGATGATGATGACTCTGAGGAACTCGAAGACATGATTATTAATCCAACTGATTCCGTCATTGTTTGTGCTCGTACTGAGGATGATCTCAGTCTTCTCGAGGTTCATATACTTGAGGACGCCGGTACTAGTGAGATGAACATGTATGTCCATCATGATATCATAATTCCTGCATTTCCACTATCCACAGCTTGGCTTGACTGCCTTCAAGGAAGAGAGAAAGGAAACTTCTTAGCTGTTGGTTCAATGGAACCGTCAATAGAAATTTGGGACCTTGATGTTATTGATGCAGTGCAGCCATGCATGGTTTTAGGTGGCATTTCAGAGAAAAAGAAGGGGAAGAAGAAATCAATCAAATACAAAGATGACAGTCACACTGACTCTGTACTTGGTCTTGCCTGGAACAAAAAGATCAGGAATGTACTTGCTAGTGCCAGTGCTGACAAGCGAGTCAAGATTTGGGATGTGGCTACTGGGAAGTGTGAGAGTACAATGGAGCATCACTCAGACAAGGTTCAAGCAGTTGCTTGGAATCATCATGAACCAAAAATTCTTCTTAGTGGTTCATTTGATCATACTGTGATCCTGAGGGATGGAAGGATGCCATCCCATCCTGGTTATAAGTGGTCAGTCACAGCTGATGTCGAGAGCTTGGCCTGGGATCCACACACTAACCACGATTTTGTGGTGAGTCTCGAGGATGGTACTGTCAAGTGTTTTGATGTTCGGACCGCAATGTCTGAATCCACATCTGATCTAAGTTCTACATTTACTCTTCATGCACATGACAAAGCTGTTACCTCAGTATCCTATAATGTGTCAGCACCTAATCTACTTGCTACTGGATCGATGGACAAAACGGTAAAGCTTTGGGATTTATCGAACAACCAACCATCTGTTGTGGCATCTAAAAACTCCAATGCTGGAGCTGTATTTTCTATTTCGTTTTCAGAGGACAACCCCTTTGTGTTGGCTATAGGAGGCTCAGAGGGAAAATTGCAAGTTTGGGACACTTTATCTGAGTCTGCTGTCTCTCGGCGTTATGAAAATTACAACAAGAATAGAACTCGGTCGTGA 1452 0.4387 MISALSWIPIGASKVEPTIAEPPSKEEIQDIITTAAASTADSENEEEAGDERMDDAGGAVDEVVRALNVADALRKADKLDDIALGLKELDMERYDDEDEGVEVFSSGIGDLYYPSNDLDPYIKDKNDDDDSEELEDMIINPTDSVIVCARTEDDLSLLEVHILEDAGTSEMNMYVHHDIIIPAFPLSTAWLDCLQGREKGNFLAVGSMEPSIEIWDLDVIDAVQPCMVLGGISEKKKGKKKSIKYKDDSHTDSVLGLAWNKKIRNVLASASADKRVKIWDVATGKCESTMEHHSDKVQAVAWNHHEPKILLSGSFDHTVILRDGRMPSHPGYKWSVTADVESLAWDPHTNHDFVVSLEDGTVKCFDVRTAMSESTSDLSSTFTLHAHDKAVTSVSYNVSAPNLLATGSMDKTVKLWDLSNNQPSVVASKNSNAGAVFSISFSEDNPFVLAIGGSEGKLQVWDTLSESAVSRRYENYNKNRTRS* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0897 483 SUPERFAMILY WD40 repeat-like 199 468 IPR036322 GO:0005515
Ahy5g0897 483 Pfam Anaphase-promoting complex subunit 4 WD40 domain 246 304 IPR024977 -
Ahy5g0897 483 ProSitePatterns Trp-Asp (WD) repeats signature. 404 418 IPR019775 -
Ahy5g0897 483 ProSiteProfiles Trp-Asp (WD) repeats profile. 429 471 IPR001680 GO:0005515
Ahy5g0897 483 ProSiteProfiles Trp-Asp (WD) repeats profile. 384 426 IPR001680 GO:0005515
Ahy5g0897 483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 384 422 - -
Ahy5g0897 483 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 1 475 IPR044285 GO:0006364
Ahy5g0897 483 Gene3D - 86 328 IPR015943 GO:0005515
Ahy5g0897 483 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 289 IPR001680 GO:0005515
Ahy5g0897 483 Pfam WD domain, G-beta repeat 381 417 IPR001680 GO:0005515
Ahy5g0897 483 SMART WD40_4 327 366 IPR001680 GO:0005515
Ahy5g0897 483 SMART WD40_4 238 280 IPR001680 GO:0005515
Ahy5g0897 483 SMART WD40_4 377 417 IPR001680 GO:0005515
Ahy5g0897 483 SMART WD40_4 283 323 IPR001680 GO:0005515
Ahy5g0897 483 SMART WD40_4 422 462 IPR001680 GO:0005515
Ahy5g0897 483 SMART WD40_4 177 216 IPR001680 GO:0005515
Ahy5g0897 483 Gene3D - 329 475 IPR015943 GO:0005515
Ahy5g0897 483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 247 285 - -
Ahy5g0897 483 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 475 - -
Ahy5g0897 483 MobiDBLite consensus disorder prediction 36 56 - -
Ahy5g0897 483 PRINTS G protein beta WD-40 repeat signature 404 418 IPR020472 -
Ahy5g0897 483 PRINTS G protein beta WD-40 repeat signature 267 281 IPR020472 -
Ahy5g0897 483 PRINTS G protein beta WD-40 repeat signature 449 463 IPR020472 -
Ahy5g0897 483 ProSitePatterns Trp-Asp (WD) repeats signature. 267 281 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0897 Ahy-Chr5 12673507 12677142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0897 264 462 U-box Gene Family AT2G33340 30.769 4.55e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0897 K14791 - gmx:100807947 695.656