Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0840 ATGGCAGGTTTGTTCTCACTAGGCGGTGGTAGTAGTAGTAGTAGTGGTAGAGGAGGGAGAGGGAACACAAACCAACAACAACAACAACACGACCAACACCAACAACACGCGGAAATTCCTCCTTCCGACACCTTTTACTGGTACAAGAATGAAGACGTTTCCTCGTACCGAGGTGGCTTGGAGCTGTGGAACCATCATCATCATCATCACCAACCGGAACACGACCTCATACCTCAAGCAAGGCCTCTCTTCCACCAAGATCTTTACAGCTCTGCGGCTGCTCTAGGAGTGGGTCCAACCACCGTGTCCGACGATCAGTCACCCTCGAGATCGGCCTTCCTGGTGACGGCGTCGGCCGTGGGAAGCGGAGCAGCAAGCGGAGCAGGAAGTGGAGCAGGTGGGATTAGCTGCCAGGACTGCGGGAACCAGGCGAAGAAGGATTGCCCTCACATGCGGTGCAGGACATGCTGCAAGAGCCGTGGCTTCGATTGCCAAACCCATGTCAAGAGCACTTGGGTTCCCGCTTCCAAGCGCCGCGAGAGGCAGCAGCAACTCGCCTCTATCCAACAACAACAGCTTCTTGCTGCTGATGTTCCCAAGCGCCAAAGAGATCATGCCTCTAGTACTCGTTTACCCACAAACCCTTCTCCTTCAGCCTCGGCTTCAGGGATGGAGAATTTTCCTGCAGTAGTGAGCTCTCCAGCTGAATTCAGATGCGTACGTGTGAGTGGAATCGACGACACAGAAGACGAGTATGCATATCAAACGGCAGTCAACATTGGAGGACACGTCTTCAAAGGGATCCTCTATGACCAGGGTCCAGATCACGCCACCACCACCACCACCAACAGCAGCAGCTACGTCGCCGGAGACACCTCCTCCACCGGTGCTGCTGCTCATCACCCTAATCTCAACCTCATTGCTCCCAACACCAACACCACAACTTCAGCCCTCGTCTCCGCTGCACACACAACGCAGCAGCTCGTAGATCCTTCATCCATGTATCCACCTCCTCTCAGCACCTTCATGGCTGGTAGTAGCGGTACGCAATTCTTCCCTCATCCAAGATCTTGA 1074 0.5447 MAGLFSLGGGSSSSSGRGGRGNTNQQQQQHDQHQQHAEIPPSDTFYWYKNEDVSSYRGGLELWNHHHHHHQPEHDLIPQARPLFHQDLYSSAAALGVGPTTVSDDQSPSRSAFLVTASAVGSGAASGAGSGAGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLASIQQQQLLAADVPKRQRDHASSTRLPTNPSPSASASGMENFPAVVSSPAEFRCVRVSGIDDTEDEYAYQTAVNIGGHVFKGILYDQGPDHATTTTTNSSSYVAGDTSSTGAAAHHPNLNLIAPNTNTTTSALVSAAHTTQQLVDPSSMYPPPLSTFMAGSSGTQFFPHPRS* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0840 357 MobiDBLite consensus disorder prediction 175 225 - -
Ahy5g0840 357 MobiDBLite consensus disorder prediction 1 42 - -
Ahy5g0840 357 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 227 274 IPR006511 -
Ahy5g0840 357 MobiDBLite consensus disorder prediction 7 39 - -
Ahy5g0840 357 PANTHER PROTEIN SHORT INTERNODES 1 355 - -
Ahy5g0840 357 Pfam Domain of unknown function (DUF702) 134 275 - -
Ahy5g0840 357 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 355 IPR007818 GO:0003700|GO:0006355
Ahy5g0840 357 MobiDBLite consensus disorder prediction 175 196 - -
Ahy5g0840 357 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 136 178 IPR006510 -
Ahy5g0840 357 MobiDBLite consensus disorder prediction 208 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0840 Ahy-Chr5 11488485 11491254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0840 1 345 C2H2 Transcription Factor Family AT5G66350 43.767 1.13e-83 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Ahy5g0840 DUF702 1.80E-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0840 - - ahf:112720334 347.436