Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0790 ATGGGAACTGATAGTGGTGAAGAAGCGGAGTCATTACCAAATCCGCGCTCCTTCAAGGTGCATAGTAAACTGTGTGTGGAACTCATGAAAATACTAGCAAGAGTTTTGAGGATATTTCCAGCAATAGAGGAGGCTCGGCCTCGAAGCTCATCAGGAATAGAGTCTCTGTGTTTGCTGAACAATGCAATCGATAAAGCCAAACTACTACTGCAGCATTGCTCTGATTGCAGCAAACTCTACCTGGCTCTGACAGGGAATGCAATACTTCAAAGATGCCAAAAGGCAAGAAAATCATTATTGCAAAGCTTGATCCAGATTCAGGGTATGGTTCCAGTTATTTTAGCTGCAGAGGTTTCTGGAATAATCGATGATCTTGAGTGTGCCACATTTGTCTTAGACTCTGCCGAAGAAGAGGCTGGGAAGGTTGTTAAGGAGTTGCTTGAGCAAGATACAGATACAATGGATGGTTCTGCAGTAAAAGCTCTTCAGTTTGCAGCACCAAGACTTAACATTACATCCCAAAAGGCCATCTTAATAGAGAAACGATCTATTAAGAAGTTGCGAGATAAAATTGGAACCAATGACCAGAAAAAGAAGGCCATTTTGAAATTTCTTTGGTATATACTGGACAAGCATGGAAATCACATTATTGGAGAAGAAATGGAGAAGGTCCATTCCCATAATGATGAACCAATAGCCACTGAGAACTCTAGTCACCATTCTCAACAAAGCCATCAAACCGAGTCTGATCCATGCTTGCACTATGACCAATATAGAACTCAGACTGATGAGTTTGGTAGAGCTACACCACTTGAGGAGTATAAGTGTCCAATATCGTCAAGATTGATGTATGATCCTGTTGTCATTGCATCTGGTGTTACATATGAAAGGATGTGGATAAAAAAGTGGTTTGATGAGGGTAATGATACATGCCCGAAAACTAAAAAGAAACTAGTGCATATGGGAATGACTCCTAATATTGCTATGAAGGACTTAATATCAAAATGGTGCAGAAACAATGGAGTCTCCATTTCTGACCCAAACAGGCTAGTAGGAGGTTTTCACTCTTGGGAAGCTTCTATGACTTCCATCAAGAGTTTTGGAAGTTACATAAATGATTTTAACTTGCCACTGGATCTTAGTAACATGTCTCTTGGATCATTGGATACTAGTTACAATTCAGATGTCTTGCATTCTAAGACCACTCGTGAGTCAAATTTGAGGTCAATAATGACTAATGATGATTCTCACAAACGTCAAGCTCAAGAACAGATGCGTGAAGCAAATTTGCAGCTCTTGTCCGAACTGCATGATCTCCAATGGGATTCTCAATGCCAGGTCATTGAAGAAGTGAAAGAAAATTTGAAAAGCAATTACCAAGCTTTTTCTTCTGTATCACCTCAGAATTTCACTGAACCACTCATCAGATTTCTGAACAGTGCTTATGATCTGCATGATGTAAAAGCTCTCAGAGCTGGAACTCAGCTGCTGTTGGAATTTGTCAACAACTGCAGAAATGGTCTGAGTAATTTCAGTGAAGATGTATTCACACTGTTGGCCAATTTTCTTGATTCAGAAGTGACAGGAGAAGCTCTTGCCGTAATGGAAGAACTCTCTAGTTATTTGCATGGAAAAGCTAAAATAGCAGCATCCAATGCACTCACTTCTATTCTAAATATACTTAATTCTGATAACAAAGAGTTCCAACGACAAGCCATTGTAATATTGTATAATTTATCCTTCAATGGTGAAGTTTGTCCCCTCATGCTATCTCTCAAGTGCATCCCAACATTGCTTCCATTTTTCAAAGACAGGTCCCTTTTGAGATACTGTATAGTTATATTGAAAAATCTTTGTGACACTGAAGAGGGTAGGAATTCTGCTGTTGAAACCAAGGGTTTCATAGCTTCTGTTGCTGAAATACTCGAAACAGGAAGCAATGAGGAAAAAGAACATGCACTTGAAGTCCTAATTTCTCTATGTTCTCAACGCATGGACTATTGTAGATTGGTTATGAGTCAGTATGTTATCTCTCATCTTTTCTATATATCCAAGAATGGAAGCGACAAAGGACAGGCAACTGCATTGGAACTGCTCCGTCTTCTGCAAGATGTAGAAGATGTGGAAGATGATGATTCCCTTGAACCGAATCTCAACAACACCTCCGGAGATTCAAACAGCCAACCTCAAGAGAGGAGATCATCAAAGGGATCAAAATTTCTGAAGAAACTACCCTTCTTAAAAACCAAGAGATGA 2256 0.3967 MGTDSGEEAESLPNPRSFKVHSKLCVELMKILARVLRIFPAIEEARPRSSSGIESLCLLNNAIDKAKLLLQHCSDCSKLYLALTGNAILQRCQKARKSLLQSLIQIQGMVPVILAAEVSGIIDDLECATFVLDSAEEEAGKVVKELLEQDTDTMDGSAVKALQFAAPRLNITSQKAILIEKRSIKKLRDKIGTNDQKKKAILKFLWYILDKHGNHIIGEEMEKVHSHNDEPIATENSSHHSQQSHQTESDPCLHYDQYRTQTDEFGRATPLEEYKCPISSRLMYDPVVIASGVTYERMWIKKWFDEGNDTCPKTKKKLVHMGMTPNIAMKDLISKWCRNNGVSISDPNRLVGGFHSWEASMTSIKSFGSYINDFNLPLDLSNMSLGSLDTSYNSDVLHSKTTRESNLRSIMTNDDSHKRQAQEQMREANLQLLSELHDLQWDSQCQVIEEVKENLKSNYQAFSSVSPQNFTEPLIRFLNSAYDLHDVKALRAGTQLLLEFVNNCRNGLSNFSEDVFTLLANFLDSEVTGEALAVMEELSSYLHGKAKIAASNALTSILNILNSDNKEFQRQAIVILYNLSFNGEVCPLMLSLKCIPTLLPFFKDRSLLRYCIVILKNLCDTEEGRNSAVETKGFIASVAEILETGSNEEKEHALEVLISLCSQRMDYCRLVMSQYVISHLFYISKNGSDKGQATALELLRLLQDVEDVEDDDSLEPNLNNTSGDSNSQPQERRSSKGSKFLKKLPFLKTKR* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0790 751 SUPERFAMILY RING/U-box 262 345 - -
Ahy5g0790 751 CDD RING-Ubox_PUB 274 316 IPR045210 -
Ahy5g0790 751 SMART Ubox_2 273 336 IPR003613 GO:0004842|GO:0016567
Ahy5g0790 751 MobiDBLite consensus disorder prediction 709 751 - -
Ahy5g0790 751 Gene3D - 412 715 IPR011989 -
Ahy5g0790 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 344 IPR013083 -
Ahy5g0790 751 MobiDBLite consensus disorder prediction 224 251 - -
Ahy5g0790 751 MobiDBLite consensus disorder prediction 235 251 - -
Ahy5g0790 751 Pfam U-box domain 272 340 IPR003613 GO:0004842|GO:0016567
Ahy5g0790 751 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 736 - -
Ahy5g0790 751 PANTHER U BOX DOMAIN-CONTAINING 2 736 - -
Ahy5g0790 751 SUPERFAMILY ARM repeat 432 703 IPR016024 -
Ahy5g0790 751 MobiDBLite consensus disorder prediction 715 734 - -
Ahy5g0790 751 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0790 Ahy-Chr5 10721199 10726209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0790 15 714 U-box Gene Family AT4G36550 37.640 4.29e-146 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0790 - - gmx:100791627 953.355