Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0727 ATGGCTACTATCCTTTTGGCCATTGTGATTGCCACCCTTTTCACTGCAAACCCTATTTCTTGCGCCAAGCAATCCAAAATAACTGGCATGAAAATGAACGTCATTGATCAATGTTGGAGATTGAATCCCCAATGGAGGAGCCATCGATCGCAACTCGCCAGCTGCTCCATTGGCTATGCGGGCAAGATGATGAACAACATTGGCAATGACCTCGTCTATTATGAAGTTACTGACCCTAGTGATGACCCCATTAACCCTAAGCCTGGTACCTTGCGGTATGGAGCTTCTATGATTCAACAAAAAGTTTGGATTACATTTAAAAGCGATATGAAAATCACATTGGCCAAACCCCTTCTCATTAGTAGCTTTACCGCCATTGATGGTCGTGGCACCAATGTCCACATTTCCAATAATGCATGCTTCATGATCTTTAAGGCAACGAATGTAATAATCCACAGCATTCGAATCCATCATTGTAAGTCACAAGCTCCTGGGTTGGTGGTGGGTCCAAATGGGAAGGTAATTTCATTGGGTCAAGTTGATGGCGATGCAATCAGACTAGTCACTGCCTCAAAGATTTGGATTGATCATAATACACTTCATGATTGCGAAGATGGTCTTCTTGATGTTACACGAGGTTCCACTGATGTCACTATCTCTAACAACTGGTTCCGAAACCAAGATAAGGTTATGCTTCTTGGCCATGACGATGGATATATTAGAGACCGGAACATGAAAGTTACTGTTGTCTACAATCATTTCGGACCGAATTGCAACCAACGCATGCCAAGGTAA 795 0.4302 MATILLAIVIATLFTANPISCAKQSKITGMKMNVIDQCWRLNPQWRSHRSQLASCSIGYAGKMMNNIGNDLVYYEVTDPSDDPINPKPGTLRYGASMIQQKVWITFKSDMKITLAKPLLISSFTAIDGRGTNVHISNNACFMIFKATNVIIHSIRIHHCKSQAPGLVVGPNGKVISLGQVDGDAIRLVTASKIWIDHNTLHDCEDGLLDVTRGSTDVTISNNWFRNQDKVMLLGHDDGYIRDRNMKVTVVYNHFGPNCNQRMPR* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0727 264 SUPERFAMILY Pectin lyase-like 32 264 IPR011050 -
Ahy5g0727 264 Pfam Pectate lyase 120 264 IPR002022 -
Ahy5g0727 264 PANTHER PECTATE LYASE 18-RELATED 10 264 IPR045032 GO:0030570
Ahy5g0727 264 SMART amb_all 109 264 IPR002022 -
Ahy5g0727 264 PANTHER PECTATE LYASE 10 264 - -
Ahy5g0727 264 Gene3D - 32 264 IPR012334 -
Ahy5g0727 264 PRINTS Pollen allergen Amb family signature 55 72 IPR018082 -
Ahy5g0727 264 PRINTS Pollen allergen Amb family signature 261 264 IPR018082 -
Ahy5g0727 264 PRINTS Pollen allergen Amb family signature 117 133 IPR018082 -
Ahy5g0727 264 PRINTS Pollen allergen Amb family signature 181 202 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0727 Ahy-Chr5 9617121 9617999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0727 63 264 Polysaccharide Lyase AT5G09280 71.782 2.21e-114 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0727 K01728 - gmx:100780437 448.743