LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy5g0709	ATGGAGCACGCCGAATTATCCACTGAACAGGTTCTGAGGAGGGACATCCCATGGGAGACCTACGTGTCCACTAAGCTCATCTCTGGTACAACCCTTCAGCTCCTACGCCGTTACGACCATCGTTCTGAAACCCACCGTGCCCAATTGCTACATGAGGATGGTCCGGCTTATGTTCGCATGTTTGTTCATGTATTGCGTGATATTTTCAAAGAAGAGACTGTAGAATATGTTCTAGCTTTGATAGATGAGATGCTCACAGCCAATCCTAAAAGAGCAAGACTGTTTCATGACAAGACCCTTGCAGATGAAGACACTTATGAACCTTTCTTAAGGTTGCTTTGGAGAGGAAATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTTGCTTTAATAGTTAGTACCAGGCCCAAAAATCAGAATGGCGGTGTTGTAAATTCAGAATCAAACTCAAAGAAAGCATTTACCACGATTGAAGATGTTCTAGGAGGATTGGTAAAATGGCTTTGCGAACAGTTGAAGAAGCCTTCTCATCCTGCACGGGGTGTTCCAACTGCCATCAATTGCCTGGCAACTCTACTTAAGGAACATGTGGTTAGGTCTTCCTTTGTTCAAGCAGATGGAATCAAGTTGCTTGTACCTTTGATTTCTCCTGCATCCACCCAACAGTCTATTCAGCTTCTTTATGAAACATGTCTCTGTGTATGGCTCTTATCCTACTATGAACCGGCAATTGAATACTTGACTACCTCAAGAACCCTTCCTTCTCTTGTTGATGTTGTTAAGAGTTCTACAAAAGAGAAGGTTGTTAGAGTTGTTGTCCTTACCTTTAAGAACTTGCTATCAAAAGGGACATTGGCTGCTCAAATGATTGACCTTCAGCTACCACAAGTTGTTCAGAGTTTGAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGGATTGAATTACCTGGAGGATGGGCTTAAGGATAGCATTAAGAAATTAAGTTCTTTTGATGTGTATAAGCAAGAAGTTCTCCTTGGCAATCTGGATTGGTCTCCCATGCACAAAGATCCCATATTTTGGCGAGATAATATTGCCCATTTTGAAGAGAATGACTTCCAGATTATAAGGGTTCTAATAACAATTTTGGACACTGGTAGCAATCCAAGGACTTTGGCTGTTGCTTGCTTTGACCTTTCGCAGTTCATCCAGCACCATCCTTCTGGGCGTCTCATTGTGGCGGACCTCAAGGCGAAGGAACGAGTAATGAAACTAATGAATCATGAGAATGCTGAAGTTACTAAGAATGCGCTGCTCTGCATCCAAAGACTTTTCTTAGGTGCAAAGTATGCCAGCTTCTTGCAGGCTTAG	1356	0.4263	MEHAELSTEQVLRRDIPWETYVSTKLISGTTLQLLRRYDHRSETHRAQLLHEDGPAYVRMFVHVLRDIFKEETVEYVLALIDEMLTANPKRARLFHDKTLADEDTYEPFLRLLWRGNWFIQEKSCKILALIVSTRPKNQNGGVVNSESNSKKAFTTIEDVLGGLVKWLCEQLKKPSHPARGVPTAINCLATLLKEHVVRSSFVQADGIKLLVPLISPASTQQSIQLLYETCLCVWLLSYYEPAIEYLTTSRTLPSLVDVVKSSTKEKVVRVVVLTFKNLLSKGTLAAQMIDLQLPQVVQSLKAQAWSDEDLLEGLNYLEDGLKDSIKKLSSFDVYKQEVLLGNLDWSPMHKDPIFWRDNIAHFEENDFQIIRVLITILDTGSNPRTLAVACFDLSQFIQHHPSGRLIVADLKAKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQA*	452

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy5g0709	451	CDD	VATPase_H	3	445	-	-
	Ahy5g0709	451	Pfam	V-ATPase subunit H	328	440	IPR011987	GO:0000221\|GO:1902600
	Ahy5g0709	451	Gene3D	-	343	443	IPR038497	-
	Ahy5g0709	451	SUPERFAMILY	ARM repeat	8	441	IPR016024	-
	Ahy5g0709	451	Pfam	V-ATPase subunit H	3	322	IPR004908	GO:0000221\|GO:0046961\|GO:1902600
	Ahy5g0709	451	SMART	arm_5	194	239	IPR000225	GO:0005515
	Ahy5g0709	451	SMART	arm_5	401	441	IPR000225	GO:0005515
	Ahy5g0709	451	SMART	arm_5	240	281	IPR000225	GO:0005515
	Ahy5g0709	451	PANTHER	V-TYPE PROTON ATPASE SUBUNIT H	1	451	-	-
	Ahy5g0709	451	PIRSF	V-ATP_synth_H	1	450	IPR004908	GO:0000221\|GO:0046961\|GO:1902600
	Ahy5g0709	451	PANTHER	V-TYPE PROTON ATPASE SUBUNIT H	1	451	IPR004908	GO:0000221\|GO:0046961\|GO:1902600
	Ahy5g0709	451	Gene3D	-	3	330	IPR011989	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy5g0709	Ahy-Chr5	9368376	9373918	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy5g0709	1	451	Primary Pumps ATPases(2)	AT3G42050	76.275	0.0	720

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy5g0709	K02144		-	gmx:100796479	782.711