Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0676 ATGTCGTCGTCGAATTCACCTTGCGCAGCGTGCAAGTTCTTGCGGAGGAAGTGCACGCAGGAGTGCGTTTTCGCGCCGTATTTCCCGCCGGACAACCCGCAGAGGTTCGCATACGTGCACAAGGTTTTCGGCGCCAGCAACGTCGCCAAGCTGCTGAACGAACTCAACGCCGCGCAGAGAGACGACGCCGTGAAGTCGTTGGCGTACGAAGCGGAGGCGCGTTTAAGAGACCCCGTCTACGGTTGCGTGGGTCTCATATCGGTGCTGCAGCACCGGCTCCGGCAGATCCAGGTGGAGCTCACCAACGCCAAGAAGGAGCTCGCCACCTACATTGGCCCTCAGGCACTGCAGGGTGTCCCAACCACCGCCATTCTCCAGCATCACCATTCCTTTGCCTCGCAGATGTTCCCTTACAACGGCGCCATGGCTGCTCCGCCAGCTATTGCTCATGGCGGACAGTTGATGATTCGCGACGCTCAGACTGCCCCTCCGCCTCCGCAGCAGCAGATCTTGGAGGCTCAGCAGCTGGCTGCTGCGGTGGTGGTGAGGGATCAACAAGATATGTTCAGAGGGTATGATCAGCATCATCAACAGCAAGAGTTTCTGAGGTTTAATGGTGGAGGGTTTGATATGGGTTCGGTTTCTTCCGGTGGTGGTGGGTACAGCCAGGTTAGTGGCGGTGGAAGTGGTGGCGGTTCTGGTGATCAGTTGTCTCCTTCGTTGGCTTTGGGGTCTTTTGACAATCCATACCATATGCAGCAAGGGGAAAGCCATGCTCACCATCTTCCTCTTCAGGCGCAGCTGCTTCTCCCACCGCAGCAAAAGCAGGCTCAACAGCAAGCACAGTCACAGCATATTCCCGGCCACCACCACCAGCAACCTTCGGAAAGCGAGGAGTGTAGGAGTGTCGGTCCATCTTGTTGA 924 0.5747 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHRLRQIQVELTNAKKELATYIGPQALQGVPTTAILQHHHSFASQMFPYNGAMAAPPAIAHGGQLMIRDAQTAPPPPQQQILEAQQLAAAVVVRDQQDMFRGYDQHHQQQEFLRFNGGGFDMGSVSSGGGGYSQVSGGGSGGGSGDQLSPSLALGSFDNPYHMQQGESHAHHLPLQAQLLLPPQQKQAQQQAQSQHIPGHHHQQPSESEECRSVGPSC* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0676 307 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 285 - -
Ahy5g0676 307 MobiDBLite consensus disorder prediction 272 290 - -
Ahy5g0676 307 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Ahy5g0676 307 MobiDBLite consensus disorder prediction 214 260 - -
Ahy5g0676 307 MobiDBLite consensus disorder prediction 272 307 - -
Ahy5g0676 307 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 1 285 - -
Ahy5g0676 307 Coils Coil 86 106 - -
Ahy5g0676 307 MobiDBLite consensus disorder prediction 216 243 - -
Ahy5g0676 307 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0676 Ahy-Chr5 8916062 8918618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0676 1 230 AS2 family AT5G66870 51.550 5.66e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy5g0676 LOB 1.70E-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0676 - - lja:Lj2g3v1834030.1 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy5g0676 5 8916062 8918618 Ahy11g0890 11 17311245 17312222 PCT
Ahy5g0676 5 8916062 8918618 Ahy1g0011 1 172767 174084 PCT