Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0645 ATGTCTCAAACCTTTGATTACCTGGCTGATTTAAATGCAAGAAAACTGCAATGGAATTTCAAAGTATATGTAATACGTGTGTGGGAACTCCCTAACAGATATAATGAAGGAGAAGTTGGCACCATTGAAGTGATTATTGAAGATAGTCAGGGCACAAGGTTGCAAGTCTCGATCCCTAAATCCCTAGTGAGCAAGTGGCGGGGTGTCTTGGTTCAGTTTCAAATGTACATTATGACCAACTTCATTGTTGTTGACAACCAAAAGGGTAACATATCAAGGGGAAAGTATTTATTATTCTTCAGTCATAGGACAATCGTCAGTCATGTTGAGAATCCCAATTTTCCGCTAAATGCTTTTCGATTTAGAACCATCCGTGAGTTACTAAATGCTGAGAAGATCGATGACTCTGCATTGTTTGACATGATTGGTGAAGTAGTTGGTAAAGAAGATCCAAAAGAGTTGATCACCAGCAAAAGAAAGGAGACTAAACGACTGACTGTTATCTTGGAGGACCTAGAAAACAATAGGATTGGGTGCACTATATTTGGTGAAATGGTTGACCAGCTACTTCGTCACATGCAAGATGGAAGGGTTGAGCCACTAATAGTTGTGGTCCAGTATTTTAAGGCAACCAGATGGAATGGCAAGACATCTGTCCAAAGCCATTTTGACATTTCACAGCTGCACATAGACTCCAACCTTAAAGATGTTGCTGAATTTAGGAGCAGGCTGCTTGGCGGTGAACCATCATCCTCTGTGAGGATTAGTCAAGTTCCATCAAAAACAGCTTGGTCAGGGGTTGAGGAGCTTAAACAAGGTGCTGTGTTAGTGAAAACAATTGAAGAAGTCCTTATCCAACATGAGGAAGGTCCAACTTGGATTGCTGCAAGTATTGTTGCGATTAATGTTACGAAGGATGATTGGTTCTATAAATCATGTAGAAAATGTCCAAAGAAAGTAGAAACTCCTATTGAAAACAGATATGAATGTGGGAAGTGTGGCCATACACATGGATCTGCAGCCCTAAGGTTCAAAGTCGAGGTGATGGTTTTTGATGGAACCGGTAGCATCCGATTGCTACTATGGGACAAGGAAACAAGTATGCTATGTGGGAAGAGAGCTGAACAGATTATGGAGGACGATGTAAGCACCTATTGTTATTCTTAA 1167 0.4079 MSQTFDYLADLNARKLQWNFKVYVIRVWELPNRYNEGEVGTIEVIIEDSQGTRLQVSIPKSLVSKWRGVLVQFQMYIMTNFIVVDNQKGNISRGKYLLFFSHRTIVSHVENPNFPLNAFRFRTIRELLNAEKIDDSALFDMIGEVVGKEDPKELITSKRKETKRLTVILEDLENNRIGCTIFGEMVDQLLRHMQDGRVEPLIVVVQYFKATRWNGKTSVQSHFDISQLHIDSNLKDVAEFRSRLLGGEPSSSVRISQVPSKTAWSGVEELKQGAVLVKTIEEVLIQHEEGPTWIAASIVAINVTKDDWFYKSCRKCPKKVETPIENRYECGKCGHTHGSAALRFKVEVMVFDGTGSIRLLLWDKETSMLCGKRAEQIMEDDVSTYCYS* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0645 388 PANTHER REPLICATION FACTOR A 1, RFA1 9 357 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy5g0645 388 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 9 357 - -
Ahy5g0645 388 CDD RPA1_DBD_B_like 140 244 - -
Ahy5g0645 388 SUPERFAMILY Nucleic acid-binding proteins 5 112 IPR012340 -
Ahy5g0645 388 Pfam Domain of unknown function DUF223 43 112 IPR003871 -
Ahy5g0645 388 Gene3D - 263 385 IPR012340 -
Ahy5g0645 388 Coils Coil 155 175 - -
Ahy5g0645 388 Pfam Replication factor-A C terminal domain 300 379 IPR013955 -
Ahy5g0645 388 SUPERFAMILY Nucleic acid-binding proteins 278 379 IPR012340 -
Ahy5g0645 388 Gene3D - 112 250 IPR012340 -
Ahy5g0645 388 SUPERFAMILY Nucleic acid-binding proteins 120 244 IPR012340 -
Ahy5g0645 388 Gene3D - 4 108 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0645 Ahy-Chr5 8420304 8422051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0645 8 355 Core DNA Replication Machinery Family AT2G06510 23.433 3.47e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0645 - - ahf:112803472 710.679