Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0634 ATGTCAGACGAAGAAGCTGCTGCAACTACCGCCGCCGGTAGGAGAAGGACCAGAGGTACCGCTTCCTCCGCCCGCAGCGAGGCCCTAGAGCGTCTCAAAGCCCGTGTCCGCGGCGGGCCCCAGATCAGGCTCGAAAACCCTATCTACGATACTGTCGAGGAAGAAGAGTACAACGCCCTTGTCGCCAAGCGCCGCGAGCAGGCCCGTGCCTTCATCGTTGACGACGATGGCCTCGGCTACGGCGATGAGGGGGAGGAAGAGGACTGGTCTAAGGGAGGCTTCTCTCTCTCCTCTGACGAATCCGATGGCGCCGAAAATGAAGCCAAGCCAAAGCGGAAGAAGCTTGAAAAGAAAGAACATAATCCCAACCAGAAACGCACATCGGCTGCGCTTTCCGCCGCCGCTGTCGGCGCCCAGCGGCTATCCTCGATGTTCACCTCATCGCTGTTCAAGAAGAGCAGGGACGACAAGGCCCCCGACAGCATCGTTGACGATGTTCTGGCGGAGTTTGCAGCCGACGAGACCGATAGGGAACGGCGGAGAAGAATCCATCCGAAAGCCATTCCCAATTCGAATTCAAATTCGTCCTCTGCTACAAACGATGCTCTTCGGATTAATCGCGATTTCGTTAGCAATTCGTCAATTGTTGGAGCATCTGATTTGATGAGAGGTTCTTCGTTGCTCAACACTGCTGTAAATTGTGATGTTGAGTCGGTTAGGGTTGTTAGCAATGACGTCAGTGATTTGGGTTCAGAGCAGAAGAAAGGCGAGGCAGTTAAAGAAAATGAGCTTTCAATTGAATGCTCGGATAATGGGAAAGTTTTTAGTTCTGAGAATGGTGATGCATCAATTGAGCAAGTTCCGAGTAATGTTAATGTTGGTAAGGAGGAAGTTGTGAAGGACTCTAAGGCAGAGGAAAAACCTGTTGCTGTGAAAAAGGAGTTGTTTACTTTGAATGCAAAGCTTAAGGAAGAAAAAGAGGACCCTGCGTTGAGTGCTACTGCGGGTTGGCAAGCAGTGAGAAATGGTGGTGCAGCGAATGCAAATGTTGGGGATTCGAAAGCATTGAGAGAGGCTTTGCATAAAGAAGAACACTCGGAGTTCAATCTGGAGGAAGATGGTTCGCTACCTTTCTACATACTCGATGCCTATGAGGAGTTTAATGGAGCGAATAGGGGAACACTTTATTTATTTGGGAAGGTTAAAGCCGGGAATTCGTATCAGAGTTGTTGTGTTGTTGTGAAGAACATGCAAAGATGTGTCTATGCCATTCCAAGTCACCCGATACATCTTACTGATGAAATGGTGAAACTTGAGAAAGATGCTAAAAAATCTGCAGATTTCCATAAAAAGCTGCAAGATGCAGTATCTGGTTTAAAGAACGAGTTAGCAAAACATCTTCTGAACTTGAATGTTTCATGCTTTAGTATGGCTCCTGTTAAGAGGAAGTATGCATTTGAAAGGTTCGAAATTCCTTCTGGTGAAAGTTATGTGCTTAAAATCAGTTATCCATTCAAGGATCAAATACTTCCTGCGGACCTGAAAGGAGAAAGTTTCTCTGGTCTTTTAGGAACTCATTACAGTGCTCTGGAGCTTTTTCTGGTTAAAAGAAAGATTAAGGGACCTTCGTGGCTACAGGTTTCGAACTTTTCAAACTGCCCAACTTCTGAGAGGGAAAGATTTGTTAGCTGGTGCAAATTTGAAGTGATTGTTGACTCCCCTAAAGACATCAGGGTTTCAACTTCATCAAAAATCAGTTTTGAGATTCCTCCTGTGGTTGTCACAGCAATAAATTTGAAAACCACCATAAATGAAAAACAGAACGTAAATGAGATTGTATCTGCATCTATAGTCTGCTGCAATATGGTTAAGATTGACACACCTATGTTGGCTTCAGAATGGAAGAGACCTGGAATGCTTACCCATTTTACTGTCATTCGTAAAATTGATGGGAATATATTTCCACTGGGGTTCAGCAAGGAGGTTACAGAGAGAAACTCAAAAGCTGGGTCAAATGTTCTGTGTGTTGAAAGCAGTGAAAGAGCTTTGCTGAATCGCCTGATGACAGAATTACACAAGTTGGATAGCGATGTTCTTGTTGGGCATAATATATCTGGATTTGACCTGGAGGTACTCCTCCATAGATCCCAGGCGTGCAAAGTACCAAGCAACATGTGGTCTAAACTAGGCCGCCTCAAGCGTTCTGCATTGCCTAGGCTTGATAGAGGAAGCAAGGCATTTGGTTCTGGAGCTCGTCCTGCTGTCATGTCTTGTATGTCTGGCCGGCTTCTTTGTGATACATTCTTGTGTTCCCGTGATCTGCTCAAAGAGGTCAGTTATTCATTAACTGAACTCACAAAAACGCAGCTGAAGAAGTTTAGGAAGGAAGTTGCTCCACATGATGTTCCAAAGAAGTTCCAATCAGCTGAATCCCTAATTGAGCTTATTGAATGTAGTGAAACGGATGCATGGTTGTCCATGGAACTCATGTTTCATTTGAGTGTTCTTCCTCTCACCCGCCAGCTGACTAATATTAGTGGTAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGGGCACAGAGAGTGGAGTTTCTTTTGTTGCATGCTTTCCATGCAAAGAAATATATGGTGCCAGACAAAATTCCAAACTATGCAAAAGAAACAACATTGACGAAACGCAAAGTAGCTCATGGTGTTGAGGATAGCAACTTACAAGAAGCAGATGGTAATGAGGCAAACTATGATAATGATGCTGCCGATACTGATAATAAGAAAAGCAAAAAGGCTCCTTCTTATGCTGGAGGTCTGGTATTAGAGCCAAAGAAGGGACTATATGACAAATATATACTACTTCTGGACTTCAATAGTCTTTATCCTTCTATCATTCAGGAATATAATATATGCTTTACCACTGTTGAAAGATCTCAAGGTGCATCATTTTCCCGTTTACCATCCAGTCTAGAAACTGGGGTCTTGCCGGAGCTGTTGAAAAATCTGGTTGAAAGGAGGAGATTGGTAAAAAAGTGGATGAAGAAAGCATCTGGTCTTAAAGTGCAGCAACTGGACATTCAGCAGCAAGCATTGAAGCTTACTGCAAACAGTATGTATGGATGCCTAGGATTTTCCAATTCAAGATTTTATGCAAAGCCAATTGCTGAACTTATAACCCTACAAGGAAGGGAGATACTGCAGAGTACTGTTGATCTTGTTCAGAATAACTTGAACTTAGAGGTCATATATGGTGATACTGATTCAATAATGATATACAGTGGTCTAGATGATATTGCAAAAGCAAAAGCAATGGCTTCAAAAGTTATTCAAGAGGTCAATAAGAAATATAGGTGCTTGGAAATTGATCTTGATGGTTTGTACAAGAGGATGCTACTACTTAAGAAAAAGAAATATGCAGCTGTTAAAGTGCAGTTCAACGATGATACCCCGTATGAGGTTATTGAACGTAAAGGTCTTGATATTGTCCGCCGGGATTGGAGCTTATTAGCTAAAGAATTGGGTGATTTTTGCTTGACTCAAATTTTGTCAGGAGGATCATGTGAAGATGTTGTTGAATCAATTCACAATTATCTCATGCAGGAGCAAGAAAAAATGAGGAGTGGACAAGTACCATTGGAGAAATATGTCATCAATAAAACATTGACTAAACCTCCGGAGGCTTATCCTGATGCCAAAAACCAGCCACATGTTCTTGTGGCACAAAGAATGAAGCAACAAGGTTACTCCTCTGGTTGTTCTGTTGGTGATACAATCCCTTACATAATTTGCTATGAAGAGGGCTGTAGTTCAGGTAGTGCAACAGGTATTGCTCAGCGTGCAAGGCATCCCGATGAACTAAAACAAGAGCAAGGGAAATGGCTTATTGACATTGAGTACTATTTGTCGCAACAGATTCATCCAGTGGTATCACGTCTTTGTGCATCAATCCAGGGCACAAGCCCAGAAAGACTGGCCGACTGTTTAGGGCTTGACTCATCAAAGTTTCAACATAAATCAAGTGAAGCTCCAAGTAGTGATCCTACAAGCTCACTTTTATTTGCTGCTGATGACGAAGAAAGGTACAGGGGATGTGAGCCACTGGTATTGTGTTGCCCCAGCTGCTCTGATTCTTTTGACTGCCCACCTGTTTTTAAGTCAATTTGTTTGTTGGGAAGTGAAAAGATAAGCAGCTCAGGCACGGAGGAATCCAGTTACAAATTCTGGCATAAACTGCGATGTTCCAAATGCCCGGAAGATGGTGTTGGAAGAATATCTCCTGCAATGCTAACCAATCAGGTCAAAATGCAAACAGAGAAGTTTGTTTTAATGTACTACAGAGGTGTACTGATGTGTGATGATGAAACGTGTAAGCATACGACACGCAGTATCAACCTTAAGTTGGTGGGTGATTCTGAGAGAGGAACTGTTTGTCCAAATTATCCTCGATGCAACGGCCGTCTCCACAGAAAGGTTGCACTTTGTGATGCTAATGTTAAAGTTACACGAGGCAGACTTGTACAAGCAGCTCTCATATTTCTGCCATGTGTTGATACTTTTGCAGTATGGAGAAGATGGAGGCTAAATCAGGATGCTAATTGA 4590 0.4331 MSDEEAAATTAAGRRRTRGTASSARSEALERLKARVRGGPQIRLENPIYDTVEEEEYNALVAKRREQARAFIVDDDGLGYGDEGEEEDWSKGGFSLSSDESDGAENEAKPKRKKLEKKEHNPNQKRTSAALSAAAVGAQRLSSMFTSSLFKKSRDDKAPDSIVDDVLAEFAADETDRERRRRIHPKAIPNSNSNSSSATNDALRINRDFVSNSSIVGASDLMRGSSLLNTAVNCDVESVRVVSNDVSDLGSEQKKGEAVKENELSIECSDNGKVFSSENGDASIEQVPSNVNVGKEEVVKDSKAEEKPVAVKKELFTLNAKLKEEKEDPALSATAGWQAVRNGGAANANVGDSKALREALHKEEHSEFNLEEDGSLPFYILDAYEEFNGANRGTLYLFGKVKAGNSYQSCCVVVKNMQRCVYAIPSHPIHLTDEMVKLEKDAKKSADFHKKLQDAVSGLKNELAKHLLNLNVSCFSMAPVKRKYAFERFEIPSGESYVLKISYPFKDQILPADLKGESFSGLLGTHYSALELFLVKRKIKGPSWLQVSNFSNCPTSERERFVSWCKFEVIVDSPKDIRVSTSSKISFEIPPVVVTAINLKTTINEKQNVNEIVSASIVCCNMVKIDTPMLASEWKRPGMLTHFTVIRKIDGNIFPLGFSKEVTERNSKAGSNVLCVESSERALLNRLMTELHKLDSDVLVGHNISGFDLEVLLHRSQACKVPSNMWSKLGRLKRSALPRLDRGSKAFGSGARPAVMSCMSGRLLCDTFLCSRDLLKEVSYSLTELTKTQLKKFRKEVAPHDVPKKFQSAESLIELIECSETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEFLLLHAFHAKKYMVPDKIPNYAKETTLTKRKVAHGVEDSNLQEADGNEANYDNDAADTDNKKSKKAPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSQGASFSRLPSSLETGVLPELLKNLVERRRLVKKWMKKASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPIAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMASKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFNDDTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHNYLMQEQEKMRSGQVPLEKYVINKTLTKPPEAYPDAKNQPHVLVAQRMKQQGYSSGCSVGDTIPYIICYEEGCSSGSATGIAQRARHPDELKQEQGKWLIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQHKSSEAPSSDPTSSLLFAADDEERYRGCEPLVLCCPSCSDSFDCPPVFKSICLLGSEKISSSGTEESSYKFWHKLRCSKCPEDGVGRISPAMLTNQVKMQTEKFVLMYYRGVLMCDDETCKHTTRSINLKLVGDSERGTVCPNYPRCNGRLHRKVALCDANVKVTRGRLVQAALIFLPCVDTFAVWRRWRLNQDAN* 1530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0634 1529 Pfam DNA polymerase family B 849 1312 IPR006134 GO:0000166|GO:0003677
Ahy5g0634 1529 PRINTS DNA-directed DNA-polymerase family B signature 1078 1086 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ahy5g0634 1529 PRINTS DNA-directed DNA-polymerase family B signature 1025 1037 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ahy5g0634 1529 PRINTS DNA-directed DNA-polymerase family B signature 949 962 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ahy5g0634 1529 Gene3D - 1156 1341 IPR042087 -
Ahy5g0634 1529 MobiDBLite consensus disorder prediction 897 931 - -
Ahy5g0634 1529 MobiDBLite consensus disorder prediction 1 42 - -
Ahy5g0634 1529 Gene3D Helix hairpin bin 988 1039 - -
Ahy5g0634 1529 MobiDBLite consensus disorder prediction 74 133 - -
Ahy5g0634 1529 TIGRFAM pol2: DNA polymerase (pol2) 48 1310 - -
Ahy5g0634 1529 SUPERFAMILY Ribonuclease H-like 372 878 IPR012337 -
Ahy5g0634 1529 MobiDBLite consensus disorder prediction 177 199 - -
Ahy5g0634 1529 Pfam DNA polymerase family B, exonuclease domain 407 784 IPR006133 -
Ahy5g0634 1529 Coils Coil 449 469 - -
Ahy5g0634 1529 CDD POLBc_alpha 925 1328 IPR045846 GO:0003887|GO:1902975
Ahy5g0634 1529 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 17 1488 - -
Ahy5g0634 1529 Gene3D DNA Polymerase alpha, zinc finger 1351 1490 IPR038256 -
Ahy5g0634 1529 SUPERFAMILY DNA/RNA polymerases 925 1328 IPR043502 -
Ahy5g0634 1529 Gene3D - 590 905 IPR036397 GO:0003676
Ahy5g0634 1529 Pfam DNA polymerase alpha subunit p180 N terminal 35 89 IPR024647 -
Ahy5g0634 1529 Coils Coil 1106 1126 - -
Ahy5g0634 1529 Gene3D - 418 540 - -
Ahy5g0634 1529 SMART polmehr3 590 1092 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ahy5g0634 1529 Gene3D Palm domain of DNA polymerase 918 1142 IPR023211 -
Ahy5g0634 1529 Gene3D - 378 576 - -
Ahy5g0634 1529 ProSitePatterns DNA polymerase family B signature. 1080 1088 IPR017964 GO:0000166|GO:0003676
Ahy5g0634 1529 CDD DNA_polB_alpha_exo 590 841 - -
Ahy5g0634 1529 Pfam DNA Polymerase alpha zinc finger 1352 1488 IPR015088 GO:0003887|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0634 Ahy-Chr5 8301944 8313877 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0634 9 1492 Core DNA Replication Machinery Family AT5G67100 59.483 0.0 1721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0634 K02320 - gmx:100798779 1999.17