Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0633 ATGTCAGACGAAGAAGCTGCTGCAACTACCGCCGCCGGTAGGAGAAGGACCAGAGGTCCGCTTCCTCCCGCCCGCAGCGAGGCCCTAGAGCGTCTCAAAGCCCGTGTCCGCGGCGGGCCCCAGATCAGGCTCGAAAACCCTATCTACGATACTGTCGAGGAAGAAGAGTACAACGCCCTTGTCGCCAAGCGCCGCGAGCAGGCCCGTGCCTTCATCGTTGACGACGATGGCCTCGGCTACGGCGATGAGGGGGAGGAAGAGGACTGGTCTAAGGGAGGCTTCTCTCTCTCCTCTGACGAATCCGATGGCGCCGAAAATGAAGCCAAGCCAAAGCGGAAGAAGCTTGAAAAGAAAGAACATAATCCCAACCAGAAACGCACATCGGCTGCGCTTTCCGCCGCCGCTGTCGGCGCCCAGCGGCTATCCTCGATGTTCACCTCATCGCTGTTCAAGAAGAGCAGGGACGACAAGGCCGACAGCATCGTTGACGATGTTCTGGCGGAGTTTGCAGCCGACGAGACCGATAGGGAACGGCGGAGAAGAATCCATCCGAAAGCCATTCCCAATTCGAATTCAAATTCGTCCTCTGCTACAAACGATGCTCTTCGGATTAATCGCGATTTCGTTAGCAATTCGTCAATTGTTGGAGCATCTGATTTGATGAGAGGTTCTTCGTTGCTCAACACTGCTGTAAATTGTGATGTTGACAAGTCCGAGTAATGTTATGTTGGTAAGGAGGAAGTTGTGAAGGACTCTAAGGCAGAGGAAAAACCTGTTGCTGTGAAAAAGGAGTTGTTTACTTTGAATGCAAAGCTTAAGGAAGAAAAAGAGGACCCTGCGTTGAGTGCTACTGCGGGTTGGCAAGCAGTGAGAAATGGTGGTGCAGCGAATGCAAATGTTGGGGATTCGAAAGCATTGAGAGAGGCTTTGCATAAAGAAGAACACTCGGAGTTCAATCTGGAGGAAGATGGTTCGCTACCTTTCTACATACTCGATGCCTATGAGGAGTTTAATGGAGCGAATAGGGGAACACTTTATTTATTTGGGAAGGTTAAAGCCGGGAATTCGTATCAGAGTTGTTGTGTTGTTGTGAAGAACATGCAAAGATGTGTCTATGCCATTCCAAGTCACCCGATACATCTTACTGATGAAATGGTGAAACTTGAGAAAGATGCTAAAAAATCTGCAGATTTCCATAAAAAGCTGCAAGATGCAGTATCTGGTTTAAAGAACGAGTTAGCAAAACATCTTCTGAACTTGAATGTTTCATGCTTTAGTATGGCTCCTGTTAAGAGGAAGTATGCATTTGAAAGGTTCGAAATTCCTTCTGGTGAAAGTTATGTGCTTAAAATCAGTTATCCATTCAAGGATCAAATACTTCCTGCGGACCTGAAAGGAGAAAGTTTCTCTGGTCTTTTAGGAACTCATTACAGTGCTCTGGAGCTTTTTCTGGTTAAAAGAAAGATTAAGGGACCTTCGTGGCTACAGGTTTCGAACTTTTCAAACTGCCCAACTTCTGAGAGGGAAAGATTTGTTAGCTGGTGCAAATTTGAAGTGATTGTTGACTCCCCTAAAGACATCAGGGTTTCAACTTCATCAAAAATCAGTTTTGAGATTCCTCCTGTGGTTGTCACAGCAATAAATTTGAAAACCACCATAAATGAAAAACAGAACGTAAATGAGATTGTATCTGCATCTATAGTCTGCTGCAATATGGTTAAGATTGACACACCTATGTTGGCTTCAGAATGGAAGAGACCTGGAATGCTTACCCATTTTACTGTCATTCGTAAAATTGATGATATATTTCCACTGGGGTTCAGCAAGGAGGTTACAGAGAGAAACTCAAAAGCTGGGTCAAATGTTCTGTGTGTTGAAAGCAGTGAAAGAGCTTTGCTGAATCGCCTGATGACAGAATTACACAAGTTGGATAGCGATGTTCTTGTTGGGCATAATATATCTGGATTTGACCTGGAGGTACTCCTCCATAGATCCCAGGCGTGCAAAGTACCAAGCAACATGTGGTCTAAACTAGGCCGCCTCAAGCGTTCTGCATTGCCTAGGCTTGATAGAGGAAGCAAGGCATTTGGTTCTGGAGCTCGTCCTGCTGTCATGTCTTGTATGTCTGGCCGGCTTCTTTGTGATACATTCTTGTGTTCCCGTGATCTGCTCAAAGAGGTCAGTTATTCATTAACTGAACTCACAAAAACGCAGCTGAAGAAGTTTAGGAAGGAAGTTGCTCCACATGATGTTCCAAAGAAGTTCCAATCAGCTGAATCCCTAATTGAGCTTATTGAATGTAGTGAAACGGATGCATGGTTGTCCATGGAACTCATGTTTCATTTGAGTGTTCTTCCTCTCACCCGCCAGCTGACTAATATTAGTGGTAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGGGCACAGAGAGTGGAGTTTCTTTTGTTGCATGCTTTCCATGCAAAGAAATATATGGTGCCAGACAAAATTCCAAACTATGCAAAAGAAACAACATTGACGAAACGCAAAGTAGCTCATGGTGTTGAGGATAGCAACTTACAAGAAGCAGATGGTAATGAGGCAAACTATGATAATGATGCTGCCGATACTGATAATAAGAAAAGCAAAAAGGCTCCTTCTTATGCTGGAGGTCTGGTATTAGAGCCAAAGAAGGGACTATATGACAAATATATACTACTTCTGGACTTCAATAGTCTTTATCCTTCTATCATTCAGGAATATAATATATGCTTTACCACTGTTGAAAGATCTCAAGGTGCATCATTTTCCCGTTTACCATCCAGTCTAGAAACTGGGGTCTTGCCGGAGCTGTTGAAAAATCTGGTTGAAAGGAGGAGATTGGTAAAAAAGTGGATGAAGAAAGCATCTGGTCTTAAAGTGCAGCAACTGGACATTCAGCAGCAAGCATTGAAGCTTACTGCAAACAGTATGTATGGATGCCTAGGATTTTCCAATTCAAGATTTTATGCAAAGCCAATTGCTGAACTTATAACCCTACAAGGAAGGGAGATACTGCAGAGTACTGTTGATCTTGTTCAGAATAACTTGAACTTAGAGGTCATATATGGTGATACTGATTCAATAATGATATACAGTGGTCTAGATGATATTGCAAAAGCAAAAGCAATGGCTTCAAAAGTTATTCAAGAGGTCAATAAGAAATATAGGTGCTTGGAAATTGATCTTGATGGTTTGTACAAGAGGATGCTACTACTTAAGAAAAAGAAATATGCAGCTGTTAAAGTGCAGTTCAACGATGATACCCCGTATGAGGTTATTGAACGTAAAGGTCTTGATATTGTCCGCCGGGATTGGAGCTTATTAGCTAAAGAATTGGGTGATTTTTGCTTGACTCAAATTTTGTCAGGAGGATCATGTGAAGATGTTGTTGAATCAATTCACAATTATCTCATGCAGGAGCAAGAAAAAATGAGGAGTGGACAAGTACCATTGGAGAAATATGTCATCAATAAAACATTGACTAAACCTCCGGAGGCTTATCCTGATGCCAAAAACCAGCCACATGTTCTTGTGGCACAAAGAATGAAGCAACAAGGTTACTCCTCTGGTTGTTCTGTTGGTGATACAATCCCTTACATAATTTGCTATGAAGAGGGCTGTAGTTCAGGTAGTGCAACAGGTATTGCTCAGCGTGCAAGGCATCCCGATGAACTAAAACAAGAGCAAGGGAAATGGCTTATTGACATTGAGTACTATTTGTCGCAACAGATTCATCCAGTGGTATCACGTCTTTGTGCATCAATCCAGGGCACAAGCCCAGAAAGACTGGCCGACTGTTTAGGGCTTGACTCATCAAAGTTTCAACATAAATCAAGTGAAGCTCCAAGTAGTGATCCTACAAGCTCACTTTTATTTGCTGCTGATGACGAAGAAAGGTACAGGGGATGTGAGCCACTGGTATTGTGTTGCCCCAGCTGCTCTGATTCTTTTGACTGCCCACCTGTTTTTAAGTCAATTTGTTTGTTGGGAAGTGAAAAGATAAGCAGCTCAGGCACGGAGGAATCCAGTTACAAATTCTGGCATAAACTGCGATGTTCCAAATGCCCGGAAGATGGTGTTGGAAGAATATCTCCTGCAATGCTAACCAATCAGGTCAAAATGCAAACAGAGAAGTTTGTTTTAATGTACTACAGAGGTGTACTGATGTGTGATGATGAAACGTGTAAGCATACGACACGCAGTATCAACCTTAAGTTGGTGGGTGATTCTGAGAGAGGAACTGTTTGTCCAAATTATCCTCGATGCAACGGCCGTCTCCACAGAAAGTACACCGAGGCAGACTTGTACAAGCAGCTCTCATATTTCTGCCATGTGTTGGATACTTTTTGCAGTATGGAGAAGATGGAGGCTAAATCTAGGATGCTAATTGAGAAGGAGTTGATGAAGATTAGACCAATGGTTGATCTAGCAGCATCCACGGTACAGAAGTTAAGAGACCGTTGTGCCTACGGTTGGGTGAATTTGCAGGACTTTGTTGTTCCTGTTTAA 4530 0.4344 MSDEEAAATTAAGRRRTRGPLPPARSEALERLKARVRGGPQIRLENPIYDTVEEEEYNALVAKRREQARAFIVDDDGLGYGDEGEEEDWSKGGFSLSSDESDGAENEAKPKRKKLEKKEHNPNQKRTSAALSAAAVGAQRLSSMFTSSLFKKSRDDKADSIVDDVLAEFAADETDRERRRRIHPKAIPNSNSNSSSATNDALRINRDFVSNSSIVGASDLMRGSSLLNTAVNCDVDKSE*CYVGKEEVVKDSKAEEKPVAVKKELFTLNAKLKEEKEDPALSATAGWQAVRNGGAANANVGDSKALREALHKEEHSEFNLEEDGSLPFYILDAYEEFNGANRGTLYLFGKVKAGNSYQSCCVVVKNMQRCVYAIPSHPIHLTDEMVKLEKDAKKSADFHKKLQDAVSGLKNELAKHLLNLNVSCFSMAPVKRKYAFERFEIPSGESYVLKISYPFKDQILPADLKGESFSGLLGTHYSALELFLVKRKIKGPSWLQVSNFSNCPTSERERFVSWCKFEVIVDSPKDIRVSTSSKISFEIPPVVVTAINLKTTINEKQNVNEIVSASIVCCNMVKIDTPMLASEWKRPGMLTHFTVIRKIDDIFPLGFSKEVTERNSKAGSNVLCVESSERALLNRLMTELHKLDSDVLVGHNISGFDLEVLLHRSQACKVPSNMWSKLGRLKRSALPRLDRGSKAFGSGARPAVMSCMSGRLLCDTFLCSRDLLKEVSYSLTELTKTQLKKFRKEVAPHDVPKKFQSAESLIELIECSETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEFLLLHAFHAKKYMVPDKIPNYAKETTLTKRKVAHGVEDSNLQEADGNEANYDNDAADTDNKKSKKAPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSQGASFSRLPSSLETGVLPELLKNLVERRRLVKKWMKKASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPIAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMASKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFNDDTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHNYLMQEQEKMRSGQVPLEKYVINKTLTKPPEAYPDAKNQPHVLVAQRMKQQGYSSGCSVGDTIPYIICYEEGCSSGSATGIAQRARHPDELKQEQGKWLIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQHKSSEAPSSDPTSSLLFAADDEERYRGCEPLVLCCPSCSDSFDCPPVFKSICLLGSEKISSSGTEESSYKFWHKLRCSKCPEDGVGRISPAMLTNQVKMQTEKFVLMYYRGVLMCDDETCKHTTRSINLKLVGDSERGTVCPNYPRCNGRLHRKYTEADLYKQLSYFCHVLDTFCSMEKMEAKSRMLIEKELMKIRPMVDLAASTVQKLRDRCAYGWVNLQDFVVPV* 1510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0633 1508 CDD DNA_polB_alpha_exo 539 789 - -
Ahy5g0633 1508 Pfam DNA Polymerase alpha zinc finger 1300 1504 IPR015088 GO:0003887|GO:0006260
Ahy5g0633 1508 MobiDBLite consensus disorder prediction 74 133 - -
Ahy5g0633 1508 Gene3D Palm domain of DNA polymerase 866 1090 IPR023211 -
Ahy5g0633 1508 Coils Coil 1054 1074 - -
Ahy5g0633 1508 SUPERFAMILY Ribonuclease H-like 321 826 IPR012337 -
Ahy5g0633 1508 TIGRFAM pol2: DNA polymerase (pol2) 325 1258 - -
Ahy5g0633 1508 MobiDBLite consensus disorder prediction 176 198 - -
Ahy5g0633 1508 Pfam DNA polymerase alpha subunit p180 N terminal 40 89 IPR024647 -
Ahy5g0633 1508 MobiDBLite consensus disorder prediction 1 26 - -
Ahy5g0633 1508 Gene3D - 327 525 - -
Ahy5g0633 1508 SMART polmehr3 539 1040 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ahy5g0633 1508 Gene3D - 367 489 - -
Ahy5g0633 1508 PRINTS DNA-directed DNA-polymerase family B signature 897 910 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ahy5g0633 1508 PRINTS DNA-directed DNA-polymerase family B signature 973 985 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ahy5g0633 1508 PRINTS DNA-directed DNA-polymerase family B signature 1026 1034 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ahy5g0633 1508 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 24 1506 - -
Ahy5g0633 1508 Pfam DNA polymerase family B, exonuclease domain 356 732 IPR006133 -
Ahy5g0633 1508 Gene3D Helix hairpin bin 936 987 - -
Ahy5g0633 1508 MobiDBLite consensus disorder prediction 845 879 - -
Ahy5g0633 1508 Pfam DNA polymerase family B 797 1260 IPR006134 GO:0000166|GO:0003677
Ahy5g0633 1508 Gene3D - 1104 1289 IPR042087 -
Ahy5g0633 1508 ProSitePatterns DNA polymerase family B signature. 1028 1036 IPR017964 GO:0000166|GO:0003676
Ahy5g0633 1508 Coils Coil 398 418 - -
Ahy5g0633 1508 CDD POLBc_alpha 873 1276 IPR045846 GO:0003887|GO:1902975
Ahy5g0633 1508 Gene3D DNA Polymerase alpha, zinc finger 1299 1493 IPR038256 -
Ahy5g0633 1508 Gene3D - 539 853 IPR036397 GO:0003676
Ahy5g0633 1508 SUPERFAMILY DNA/RNA polymerases 873 1276 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0633 Ahy-Chr5 8282580 8294632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0633 9 1506 Core DNA Replication Machinery Family AT5G67100 60.338 0.0 1808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0633 K02320 - gmx:100798779 2070.43