Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0629 ATGAACCCTTTAGGACTGACGGAAACTGAGGTTGCAGCATGTATTGGACGGGAAATTTTCCAAACTGTTGGTGAGCAGCCTCAGAACATTGATGCATGCGGCATATGTCTGGAGGATTACGTTCACGGTGAAGAGCTTGGGAGATTGGATTGTGCGCACAGATATCACCTTTCTTGCATCAGTCAGTGGTTGCTCATCAAGAACAGATGCCCCGTTTGCAAGAAAATGGCTCTCACCATCATAGACTTGGAGGATGACGAGTAA 264 0.4697 MNPLGLTETEVAACIGREIFQTVGEQPQNIDACGICLEDYVHGEELGRLDCAHRYHLSCISQWLLIKNRCPVCKKMALTIIDLEDDE* 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0629 87 SUPERFAMILY RING/U-box 32 80 - -
Ahy5g0629 87 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 82 IPR013083 -
Ahy5g0629 87 SMART ring_2 33 73 IPR001841 -
Ahy5g0629 87 ProSiteProfiles Zinc finger RING-type profile. 33 74 IPR001841 -
Ahy5g0629 87 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 5 78 - -
Ahy5g0629 87 Pfam Ring finger domain 32 74 IPR001841 -
Ahy5g0629 87 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 5 78 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0629 Ahy-Chr5 8219611 8220374 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0629 25 78 C3H Transcription Factor Family AT2G15530 55.556 1.49e-18 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0629 - K22753 ahf:114927716 187.578