Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g0617 ATGTGGGATCTGAATGACTCTCCCGACCACAGAAAGGACTACGACTCTGAAGAAGCTTGTTCTTCACCCAAGACTACCACTACTTCCATGGACGATGACGTCAGAGGCAAGACCCTCCGATCTGCCTCCAATTCCAGCTCCTCTGCAGTCCTCCTAGAAGACGGATCCGAAGAAGACGAAGAACAAGCCAGCAGAACAACAACCACTCTCAACAACATCAACAGTACCAGCAAGATATTCGGCTTCTCCGTCACCCCCATGGACGGCGACGACAACCCTCCCGTGACCCATCAGTTTTTCCCGGTGGAGGACTCCGGCTGTGGCGGAGGAGGAGGAGGAAGCTCGTCGTCGTCGTCGTTCCCTCGAGCGCACTGGGTTGGCGTGAAGTTCTGTCAATCGGAAGCAGCAGTTGGGGGCGGTGGGAAATCGGCGGCGGTGGAAGTATCTCAGCCTATGAAGAAGAGCCGGAGAGGACCAAGGTCTCGGAGCTCACAGTATAGAGGAGTGACCTTTTACCGAAGAACGGGTCGTTGGGAATCTCATATTTGGGATTGTGGAAAACAAGTTTATCTGGGTGGATTTGACACCGCACATGCAGCTGCTCGTGCTTATGATAGAGCGGCAATTAAGTTCCGCGGAGTGGAGGCTGACATTAACTTCAACATAGAAGACTACGAAGAAGACTTGAAGCAGATGACGAATTTGACAAAGGAAGAATTTGTGCACGTGCTTCGGCGACAAAGCACTGGCTTTCCAAGAGGAAGTTCCAAATATAGAGGCGTTACCTTGCACAAGTGTGGAAGATGGGAGGCTCGTATGGGCCAATTTCTAGGCAAAAAGTACGTTTATCTGGGCCTCTTTGACACTGAGATTGAAGCTGCCAGGGCATATGACAAAGCAGCAATCAAATGCAATGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTATGAAAACGAGCTTAATTCTGAATCGTCAGGAGGCAACGGTGCAGCAGATCACAATCTGGATCTAAGTTTGGGCAATCCAAGTTCAAAGCATAGCAGTACAACAGATTGGCACAATGAGGGAGCCAACAATAACAAGCATAAGCTGGTGAATATACTACCAAAACCATGTAGTAGCAGAAGCAACATAGAGAGTGAAGCCATGCCCCCAATGCGGCTGCTAAGTACTCATCAAACGCAATTTCCGCTCTCAAACGAAATGCATAGATACGGTCCTTATTATAGATCCCATGCAGCTGGAGAAACTCCGCATCAAATGCTACACGCGTTTCCACCAAATTTTCATTTTCCAAGCAGCAGCAAAGGAGGCCGAATTGGAAGCGAGCTTTCGCTGTCATCATCAATGAGCGATCAAGAACAGTGGCAAGCAGGAGCTGGAGGAGGGCCTCCACATTTGTTAGCAACTGCTGCTGCAGCATCATCAGGATTCCCGCCGCAGATTTTAACACCCTCGTCCCAAGGTTGGATCCACAAAAATGGCTTCCACACTCTCATGAGACCCTCTTAA 1518 0.496 MWDLNDSPDHRKDYDSEEACSSPKTTTTSMDDDVRGKTLRSASNSSSSAVLLEDGSEEDEEQASRTTTTLNNINSTSKIFGFSVTPMDGDDNPPVTHQFFPVEDSGCGGGGGGSSSSSSFPRAHWVGVKFCQSEAAVGGGGKSAAVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESSGGNGAADHNLDLSLGNPSSKHSSTTDWHNEGANNNKHKLVNILPKPCSSRSNIESEAMPPMRLLSTHQTQFPLSNEMHRYGPYYRSHAAGETPHQMLHAFPPNFHFPSSSKGGRIGSELSLSSSMSDQEQWQAGAGGGPPHLLATAAAASSGFPPQILTPSSQGWIHKNGFHTLMRPS* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g0617 505 Pfam AP2 domain 165 213 IPR001471 GO:0003700|GO:0006355
Ahy5g0617 505 Pfam AP2 domain 256 305 IPR001471 GO:0003700|GO:0006355
Ahy5g0617 505 MobiDBLite consensus disorder prediction 435 469 - -
Ahy5g0617 505 MobiDBLite consensus disorder prediction 142 164 - -
Ahy5g0617 505 PRINTS Ethylene responsive element binding protein signature 296 316 IPR001471 GO:0003700|GO:0006355
Ahy5g0617 505 PRINTS Ethylene responsive element binding protein signature 258 269 IPR001471 GO:0003700|GO:0006355
Ahy5g0617 505 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 364 - -
Ahy5g0617 505 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 376 503 - -
Ahy5g0617 505 SUPERFAMILY DNA-binding domain 256 316 IPR016177 GO:0003677
Ahy5g0617 505 Gene3D AP2/ERF domain 256 315 IPR036955 GO:0003700|GO:0006355
Ahy5g0617 505 Gene3D AP2/ERF domain 164 223 IPR036955 GO:0003700|GO:0006355
Ahy5g0617 505 ProSiteProfiles AP2/ERF domain profile. 257 314 IPR001471 GO:0003700|GO:0006355
Ahy5g0617 505 SUPERFAMILY DNA-binding domain 164 222 IPR016177 GO:0003677
Ahy5g0617 505 MobiDBLite consensus disorder prediction 1 70 - -
Ahy5g0617 505 MobiDBLite consensus disorder prediction 440 458 - -
Ahy5g0617 505 CDD AP2 256 316 IPR001471 GO:0003700|GO:0006355
Ahy5g0617 505 MobiDBLite consensus disorder prediction 1 19 - -
Ahy5g0617 505 ProSiteProfiles AP2/ERF domain profile. 165 221 IPR001471 GO:0003700|GO:0006355
Ahy5g0617 505 MobiDBLite consensus disorder prediction 321 362 - -
Ahy5g0617 505 SMART rav1_2 257 320 IPR001471 GO:0003700|GO:0006355
Ahy5g0617 505 SMART rav1_2 165 227 IPR001471 GO:0003700|GO:0006355
Ahy5g0617 505 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 364 - -
Ahy5g0617 505 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 376 503 - -
Ahy5g0617 505 CDD AP2 165 222 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g0617 Ahy-Chr5 7862871 7865961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g0617 1 505 AP2-EREBP Transcription Factor Family AT4G36920 54.598 1.41e-138 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Ahy5g0617 AP2 3.50E-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g0617 K09284 - gmx:100801975 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy5g0617 5 7862871 7865961 Ahy11g0966 11 20264554 20270093 PCT
Ahy5g0617 5 7862871 7865961 Ahy1g0972 1 15825688 15831488 PCT
Ahy11g0966 11 20264554 20270093 Ahy5g0617 5 7862871 7865961 PCT
Ahy1g0972 1 15825688 15831488 Ahy5g0617 5 7862871 7865961 PCT